Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   MNG38_RS12640 Genome accession   NZ_CP093289
Coordinates   2457681..2458718 (-) Length   345 a.a.
NCBI ID   WP_044052501.1    Uniprot ID   -
Organism   Bacillus subtilis strain H2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2452681..2463718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNG38_RS12590 (MNG38_12590) tasA 2452779..2453564 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  MNG38_RS12595 (MNG38_12595) sipW 2453628..2454200 (-) 573 WP_003246088.1 signal peptidase I SipW -
  MNG38_RS12600 (MNG38_12600) tapA 2454184..2454945 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  MNG38_RS12605 (MNG38_12605) yqzG 2455217..2455543 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MNG38_RS12610 (MNG38_12610) spoIITA 2455585..2455764 (-) 180 WP_029726723.1 YqzE family protein -
  MNG38_RS12615 (MNG38_12615) comGG 2455835..2456209 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  MNG38_RS12620 (MNG38_12620) comGF 2456210..2456593 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  MNG38_RS12625 (MNG38_12625) comGE 2456619..2456966 (-) 348 WP_021480020.1 ComG operon protein 5 Machinery gene
  MNG38_RS12630 (MNG38_12630) comGD 2456950..2457381 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  MNG38_RS12635 (MNG38_12635) comGC 2457371..2457667 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  MNG38_RS12640 (MNG38_12640) comGB 2457681..2458718 (-) 1038 WP_044052501.1 comG operon protein ComGB Machinery gene
  MNG38_RS12645 (MNG38_12645) comGA 2458705..2459775 (-) 1071 WP_242139143.1 competence protein ComGA Machinery gene
  MNG38_RS12650 (MNG38_12650) - 2459988..2460185 (-) 198 WP_014480259.1 CBS domain-containing protein -
  MNG38_RS12655 (MNG38_12655) corA 2460187..2461140 (-) 954 WP_015483432.1 magnesium transporter CorA -
  MNG38_RS12660 (MNG38_12660) yqhB 2461283..2462611 (+) 1329 WP_003230150.1 hemolysin family protein -
  MNG38_RS12665 (MNG38_12665) rsbRD 2462664..2463500 (-) 837 WP_015714260.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39746.21 Da        Isoelectric Point: 9.6257

>NTDB_id=662994 MNG38_RS12640 WP_044052501.1 2457681..2458718(-) (comGB) [Bacillus subtilis strain H2]
MKKIRKVWLLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSPFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=662994 MNG38_RS12640 WP_044052501.1 2457681..2458718(-) (comGB) [Bacillus subtilis strain H2]
ATGAAAAAGATTAGAAAAGTCTGGTTGTTAAAGGATCAAGCCAGGTTATTAAAGAGGCTTGGTGAAATGACTGCGGGCGG
ATATACACTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

99.69

93.623

0.933