Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG573_RS14340 Genome accession   NZ_CP108557
Coordinates   3064783..3065463 (-) Length   226 a.a.
NCBI ID   WP_327284559.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01205     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3059783..3070463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG573_RS14315 (OG573_14305) - 3059900..3061096 (-) 1197 WP_327284554.1 cytochrome P450 -
  OG573_RS14320 (OG573_14310) - 3061231..3062382 (+) 1152 WP_327284555.1 delta-60 repeat domain-containing protein -
  OG573_RS14325 (OG573_14315) - 3062401..3062664 (+) 264 WP_327284556.1 hypothetical protein -
  OG573_RS14330 (OG573_14320) vraR 3062687..3063346 (-) 660 WP_327284557.1 response regulator transcription factor Regulator
  OG573_RS14335 (OG573_14325) - 3063343..3064695 (-) 1353 WP_327284558.1 histidine kinase -
  OG573_RS14340 (OG573_14330) vraR 3064783..3065463 (-) 681 WP_327284559.1 response regulator transcription factor Regulator
  OG573_RS14345 (OG573_14335) - 3065473..3066858 (-) 1386 WP_327284560.1 histidine kinase -
  OG573_RS14350 (OG573_14340) - 3066851..3068062 (-) 1212 WP_327284561.1 acyltransferase -
  OG573_RS14355 (OG573_14345) - 3068055..3069074 (-) 1020 WP_327284562.1 alpha/beta hydrolase -
  OG573_RS14360 (OG573_14350) - 3069296..3069811 (+) 516 WP_327284563.1 diadenosine tetraphosphate hydrolase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24084.82 Da        Isoelectric Point: 4.6899

>NTDB_id=662989 OG573_RS14340 WP_327284559.1 3064783..3065463(-) (vraR) [Streptomyces sp. NBC_01205]
MSTPPDPIKVMIADDQMMVRQGFTVLLNAQPDIRVVGQAVDGADAVAKVAELGPDVVLMDIRMPGMGGIEATSIITATPD
STVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRMGAPRAPSKARIDE
LTERETEVLSLIAQGLSNAEIAGHLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYETGLVRPTGY

Nucleotide


Download         Length: 681 bp        

>NTDB_id=662989 OG573_RS14340 WP_327284559.1 3064783..3065463(-) (vraR) [Streptomyces sp. NBC_01205]
ATGAGCACTCCGCCCGACCCGATCAAGGTGATGATCGCCGACGACCAGATGATGGTCCGGCAGGGCTTCACCGTCCTCCT
CAATGCCCAGCCCGACATCCGGGTCGTCGGGCAGGCCGTGGACGGCGCCGACGCGGTGGCGAAGGTCGCCGAACTCGGCC
CGGACGTGGTGCTGATGGACATCCGCATGCCCGGGATGGGCGGCATCGAGGCCACCTCGATCATCACGGCAACCCCGGAC
TCCACCGTCAAGGTGCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGCGCCGGGGCCTCCGG
GTTCCTACTGAAGGACGCGTCGGCCGACCAACTCGCCGAGGCGGTCCGGGTGGTGGCGGCCGGTGAGGCGCTGCTCTCAC
CGAACATCACGAAGCGGCTGATCACCGAGTTCTCCCGGATGGGGGCGCCGCGGGCGCCCTCCAAGGCGCGGATCGACGAG
CTGACCGAGCGGGAGACCGAGGTGCTGTCGCTGATCGCGCAGGGCCTGTCCAACGCGGAGATCGCCGGGCACCTAGTCGT
GGCCGAGCAGACAGTGAAGACCCATGTGGGGCGGATCCTCGTGAAGCTGGGCCTGCGGGACCGCACCCAGGCCGCGGTGT
TCGCGTACGAGACGGGTCTGGTCCGTCCGACGGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-123)

Bacterial regulatory proteins, luxR family (GerE)

(160-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.779

96.018

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

41.333

99.558

0.412