Detailed information NTG0066265

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PCAU_RS08020
• Genome accession: NZ_AP014623
• Coordinates: 1767766..1769997 (+)
• Length: 743 a.a.
• NCBI ID: WP_096373427.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain StFRB508
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1762766..1774997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCAU_RS07995 (PCAU_1595)	-	1763887..1764546 (+)	660	WP_096373424.1	transglutaminase-like domain-containing protein	-
PCAU_RS08000 (PCAU_1596)	-	1764589..1765212 (+)	624	WP_096373425.1	glutathione S-transferase family protein	-
PCAU_RS08005 (PCAU_1597)	-	1765345..1766277 (+)	933	WP_053268526.1	ABC transporter ATP-binding protein	-
PCAU_RS08010 (PCAU_1598)	-	1766274..1767053 (+)	780	WP_007931651.1	ABC transporter permease	-
PCAU_RS08015 (PCAU_1599)	-	1767102..1767617 (-)	516	WP_096373426.1	DUF2062 domain-containing protein	-
PCAU_RS08020 (PCAU_1600)	comA	1767766..1769997 (+)	2232	WP_096373427.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PCAU_RS08025 (PCAU_1601)	exbB	1770100..1770735 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PCAU_RS08030 (PCAU_1602)	-	1770732..1771160 (+)	429	WP_009047818.1	ExbD/TolR family protein	-
PCAU_RS08035 (PCAU_1603)	lpxK	1771160..1772170 (+)	1011	WP_096373428.1	tetraacyldisaccharide 4'-kinase	-
PCAU_RS08040 (PCAU_1604)	-	1772194..1772379 (+)	186	WP_007931663.1	Trm112 family protein	-
PCAU_RS08045 (PCAU_1605)	kdsB	1772376..1773140 (+)	765	WP_096373429.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PCAU_RS08050 (PCAU_1606)	-	1773140..1773604 (+)	465	WP_096373430.1	low molecular weight protein-tyrosine-phosphatase	-
PCAU_RS08055 (PCAU_1607)	murB	1773601..1774620 (+)	1020	WP_096373431.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81307.45 Da
• Isoelectric Point: 10.0461

>NTDB_id=66265 PCAU_RS08020 WP_096373427.1 1767766..1769997(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain StFRB508]
MRTGMLALAAGLLSLRFWPALPAIGWLAVLPVVALMLLPFRTYALALFLLGLTWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGGWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNTVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLVVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHSNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=66265 PCAU_RS08020 WP_096373427.1 1767766..1769997(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain StFRB508]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTGGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTGTTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATGCATTGGCACTTTTTCTGTTGGGCCTGACGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGATGATCGTTTGCCGGAACCGCTCGACGGACAGACCCGCTGGCTTGAGGGC
CGGGTGGTGGGACTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGTCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGACAACTGCTGGTTGCCGCTGAGGGTGGCTGGCGTGCGCGTATTCGCCAGCGCTTGCTGCAGGTCGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCGTTCGCCTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGCGTGATGGTTGCCCTGGTACTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCATTTCTGCTGGCGTTGAATACGGTGCTGTTGTTCGAGCCGCTG
GCCAGCCTGCAGCCAGGGTTCTGGCTATCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGTCTGGGAGG
CTGGCGCTGGTGGCAATCCTGGACCCGTATTCAATGGCTGATCGCCATCGGCCTGTGCCCGGTGCTGTTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGTGGTGCCTTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGCGGTTTGCTGGACTTGCTGTT
CCGCGGTCTGACGCTATTGGCTGCCCAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGAGCCTTTCTGCTGTTGCTGCCCGCTGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTTCCGCCGAAAAACACCCTGCCATACGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGGCTGGCGGTACTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGCCCGCGTTTGGGCGATTCCGACCTGGGCGCGCGGGTGGTACTGC
CATCATTGCGCAAGCTGGGCATAGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCTGGTGGCGCG
GACGCCGTCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAATGGCAATGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGACATCGACGCCCTGGCGGAA
CGCGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTGGCGCCTTCGGCGGTGCTGATTTCCCGAGGGCATAGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTACGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.256	96.77	0.622