Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PCAU_RS08025 Genome accession   NZ_AP014623
Coordinates   1770100..1770735 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain StFRB508     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1765100..1775735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCAU_RS08005 (PCAU_1597) - 1765345..1766277 (+) 933 WP_053268526.1 ABC transporter ATP-binding protein -
  PCAU_RS08010 (PCAU_1598) - 1766274..1767053 (+) 780 WP_007931651.1 ABC transporter permease -
  PCAU_RS08015 (PCAU_1599) - 1767102..1767617 (-) 516 WP_096373426.1 DUF2062 domain-containing protein -
  PCAU_RS08020 (PCAU_1600) comA 1767766..1769997 (+) 2232 WP_096373427.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PCAU_RS08025 (PCAU_1601) exbB 1770100..1770735 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PCAU_RS08030 (PCAU_1602) - 1770732..1771160 (+) 429 WP_009047818.1 ExbD/TolR family protein -
  PCAU_RS08035 (PCAU_1603) lpxK 1771160..1772170 (+) 1011 WP_096373428.1 tetraacyldisaccharide 4'-kinase -
  PCAU_RS08040 (PCAU_1604) - 1772194..1772379 (+) 186 WP_007931663.1 Trm112 family protein -
  PCAU_RS08045 (PCAU_1605) kdsB 1772376..1773140 (+) 765 WP_096373429.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PCAU_RS08050 (PCAU_1606) - 1773140..1773604 (+) 465 WP_096373430.1 low molecular weight protein-tyrosine-phosphatase -
  PCAU_RS08055 (PCAU_1607) murB 1773601..1774620 (+) 1020 WP_096373431.1 UDP-N-acetylmuramate dehydrogenase -
  PCAU_RS08060 (PCAU_1608) - 1774869..1775339 (+) 471 WP_038580901.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=66266 PCAU_RS08025 WP_007931657.1 1770100..1770735(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain StFRB508]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=66266 PCAU_RS08025 WP_007931657.1 1770100..1770735(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain StFRB508]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGTTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTCGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment