Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG233_RS28235 Genome accession   NZ_CP108536
Coordinates   6489160..6490182 (-) Length   340 a.a.
NCBI ID   WP_327270252.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01218     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6484160..6495182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG233_RS28225 (OG233_28235) - 6484556..6486982 (+) 2427 WP_327270250.1 glycosyl hydrolase family 65 protein -
  OG233_RS28230 (OG233_28240) - 6487156..6488280 (-) 1125 WP_327270251.1 lytic polysaccharide monooxygenase -
  OG233_RS28235 (OG233_28245) cytR 6489160..6490182 (-) 1023 WP_327270252.1 LacI family DNA-binding transcriptional regulator Regulator
  OG233_RS28240 (OG233_28250) - 6490918..6492291 (+) 1374 WP_327270253.1 cellulase family glycosylhydrolase -
  OG233_RS28245 (OG233_28255) - 6492589..6493020 (+) 432 WP_275495476.1 DoxX family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36513.60 Da        Isoelectric Point: 5.3120

>NTDB_id=662497 OG233_RS28235 WP_327270252.1 6489160..6490182(-) (cytR) [Streptomyces sp. NBC_01218]
MLKRSFGTPTLEEVAALAGVGRSTASRVINNASGVKASTRRAVQRAIDELGYVPNLAARSLAGRRADAVALVMTKTDWRL
FGEPFFSEVARAVGDALAESGVQLLLTLVRTDAERQRLVEYVRGGRVDGALLMSVRAEDRLPDMLAEAGLPTVLLGRRSS
DEQVTYVDADNVGGARAAVAHLVSGGRTAIATITGPPEMYVAQCRLRGYQEALEEAGLSAEPSLVVQGDFSVSSGRRAMA
GLIERHPEVDAVFAASDSMAAGALTALHAAGRRVPEDVAVIGFDDFELAEQTDPPLTTVRQPMEEIGRTMVRLLLEEMNQ
PEVAWRHVILRTRLVVRESA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=662497 OG233_RS28235 WP_327270252.1 6489160..6490182(-) (cytR) [Streptomyces sp. NBC_01218]
ATGCTGAAGCGCAGTTTCGGCACACCGACGTTGGAGGAAGTGGCCGCCCTTGCCGGAGTGGGGCGGAGCACGGCTTCCCG
AGTGATCAACAACGCGTCGGGCGTCAAGGCGTCCACACGCCGTGCCGTGCAGCGCGCCATCGACGAACTGGGCTATGTGC
CCAATCTGGCCGCGCGCTCGCTGGCCGGCAGGCGTGCGGACGCCGTCGCGCTGGTCATGACGAAGACGGACTGGCGGCTC
TTCGGCGAGCCGTTCTTCTCGGAGGTCGCCCGGGCCGTCGGGGACGCCCTGGCCGAGTCGGGCGTGCAGCTGCTGCTCAC
GCTCGTCCGTACCGACGCCGAACGGCAACGGCTCGTGGAGTACGTGCGCGGCGGCCGGGTCGACGGAGCACTGCTGATGT
CCGTGCGGGCCGAGGACCGGCTGCCGGACATGCTGGCCGAAGCAGGGCTGCCCACGGTGCTGCTGGGCAGGCGTTCCAGC
GACGAGCAGGTGACCTATGTGGACGCGGACAACGTGGGCGGTGCGCGGGCGGCGGTGGCCCATCTGGTGAGCGGCGGACG
GACGGCGATCGCCACGATCACCGGCCCGCCCGAGATGTACGTCGCCCAGTGCAGGCTACGCGGCTACCAGGAGGCGCTGG
AGGAGGCCGGACTCTCCGCGGAGCCGTCACTCGTCGTCCAGGGCGACTTCTCCGTGTCGAGCGGGCGGCGGGCGATGGCC
GGGCTCATCGAGCGGCACCCGGAGGTGGATGCCGTCTTCGCCGCGTCGGACAGCATGGCCGCCGGGGCGCTGACCGCCCT
GCACGCGGCGGGGCGCCGGGTACCGGAGGACGTGGCGGTGATCGGATTCGACGACTTCGAGTTGGCCGAGCAGACCGATC
CGCCGCTGACGACCGTCCGCCAGCCGATGGAGGAGATCGGCCGGACCATGGTGCGACTGCTGCTGGAGGAGATGAACCAG
CCGGAAGTGGCCTGGCGCCACGTGATCCTGCGGACTCGGCTGGTGGTGCGCGAGTCGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(10-55)

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.176

100

0.362