Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OG324_RS37765 Genome accession   NZ_CP108512
Coordinates   8274675..8275322 (+) Length   215 a.a.
NCBI ID   WP_327432418.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01236     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 8269675..8280322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG324_RS37740 (OG324_37765) - 8269818..8270297 (+) 480 WP_327432413.1 DUF6099 family protein -
  OG324_RS37745 (OG324_37770) - 8270536..8270700 (-) 165 WP_327432414.1 hypothetical protein -
  OG324_RS37750 (OG324_37775) - 8270944..8271867 (-) 924 WP_327432415.1 LLM class F420-dependent oxidoreductase -
  OG324_RS37755 (OG324_37780) - 8272113..8273258 (+) 1146 WP_327432416.1 extracellular solute-binding protein -
  OG324_RS37760 (OG324_37785) - 8273383..8274678 (+) 1296 WP_327432417.1 sensor histidine kinase -
  OG324_RS37765 (OG324_37790) letA 8274675..8275322 (+) 648 WP_327432418.1 response regulator transcription factor Regulator
  OG324_RS37770 (OG324_37795) - 8275598..8277073 (+) 1476 WP_327432419.1 3' terminal RNA ribose 2'-O-methyltransferase Hen1 -
  OG324_RS37775 (OG324_37800) - 8277070..8279649 (+) 2580 WP_327432420.1 polynucleotide kinase-phosphatase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 22866.32 Da        Isoelectric Point: 5.7377

>NTDB_id=661932 OG324_RS37765 WP_327432418.1 8274675..8275322(+) (letA) [Streptomyces sp. NBC_01236]
MTAEPLRVLIADDHAVVRAGLRALLEGEPDLDVVAEAHSGEEAVRLTAQLTPDVALMDLRFAGPGDGIDGVEATRRLAAR
APRVAVVILTSYAGRADVVRALEAGARGYVLKAGPPEELFRAVRTAAAGSMGLAPEIVGELVGQVVSPRHDLSDREIEVV
RLMAEGLSNRAIAEALFLSEATIKTHLVRVYRKLKVDNRAAAVSEAVRRGVLELT

Nucleotide


Download         Length: 648 bp        

>NTDB_id=661932 OG324_RS37765 WP_327432418.1 8274675..8275322(+) (letA) [Streptomyces sp. NBC_01236]
ATGACCGCCGAACCGCTTCGCGTCCTGATCGCGGACGACCACGCCGTCGTACGGGCCGGACTGCGCGCCCTCCTGGAGGG
CGAACCCGACCTCGACGTGGTCGCCGAGGCGCACAGCGGTGAGGAAGCCGTCCGCCTGACCGCCCAGTTGACGCCGGACG
TCGCGCTGATGGATCTGCGGTTCGCCGGCCCGGGCGACGGCATCGACGGCGTCGAGGCGACCCGCCGGCTCGCCGCCAGG
GCCCCGCGCGTGGCCGTGGTGATACTGACCAGCTATGCCGGACGGGCCGACGTCGTCCGCGCGTTGGAGGCGGGCGCCCG
CGGCTACGTACTCAAGGCGGGACCGCCCGAGGAACTCTTCCGGGCGGTCCGCACCGCCGCCGCCGGTTCCATGGGGCTCG
CCCCGGAGATCGTCGGTGAACTCGTCGGCCAAGTGGTCAGCCCGCGGCACGACTTGAGCGACCGCGAGATCGAGGTCGTC
CGGCTGATGGCCGAGGGCCTCAGCAACCGCGCCATCGCCGAGGCCCTGTTCCTCAGCGAGGCCACGATCAAGACCCATCT
CGTCCGCGTCTACCGCAAACTCAAGGTCGACAACCGGGCGGCGGCGGTCTCGGAGGCCGTCCGCCGAGGCGTCCTCGAAC
TCACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-205)

Response regulator receiver domain (Response_reg)

(8-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

37.559

99.07

0.372
  letA Legionella pneumophila strain ERS1305867

37.559

99.07

0.372
  degU Bacillus subtilis subsp. subtilis str. 168

34.934

100

0.372