Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG324_RS12275 Genome accession   NZ_CP108512
Coordinates   2637830..2639959 (-) Length   709 a.a.
NCBI ID   WP_327427889.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2632830..2644959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG324_RS12255 (OG324_12240) - 2633331..2633633 (-) 303 WP_327427885.1 hypothetical protein -
  OG324_RS12260 (OG324_12245) - 2633762..2634751 (-) 990 WP_327427886.1 TerC/Alx family metal homeostasis membrane protein -
  OG324_RS12265 (OG324_12250) - 2635024..2637045 (-) 2022 WP_327427887.1 TerD family protein -
  OG324_RS12270 (OG324_12255) - 2637091..2637669 (-) 579 WP_327427888.1 TerD family protein -
  OG324_RS12275 (OG324_12260) uvrB 2637830..2639959 (-) 2130 WP_327427889.1 excinuclease ABC subunit UvrB Machinery gene
  OG324_RS12280 (OG324_12265) - 2640000..2640866 (-) 867 WP_327427890.1 MHYT domain-containing protein -
  OG324_RS12285 (OG324_12270) - 2641146..2642015 (+) 870 WP_327427891.1 glycerophosphodiester phosphodiesterase family protein -
  OG324_RS12290 (OG324_12275) - 2642103..2642657 (+) 555 WP_327427892.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG324_RS12295 (OG324_12280) - 2642873..2644165 (+) 1293 WP_327434965.1 MFS transporter -
  OG324_RS12300 (OG324_12285) - 2644200..2644562 (-) 363 WP_327427893.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79943.76 Da        Isoelectric Point: 4.8664

>NTDB_id=661874 OG324_RS12275 WP_327427889.1 2637830..2639959(-) (uvrB) [Streptomyces sp. NBC_01236]
MRPVSKIERSVAPFEVVSSYQPSGDQPTAIAELEKRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGDEIDRDDLLRRFVDIQYTRNDMAFARGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVMSDDNQIYVFPASHYVAGPERMERAVNDIEKELGERLTELEKQSKLLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDGREPGSPPNTLIDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGKYELSRGDGFVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIEETNRRREKQVAYNTERGIDPQPLRKKINDIVAQIAREDVDTEQLLGSGYRKTKDGKGAKALVPALGG
KAAKSAKGKAKETVPTDRPAAELAGQIEEMTERMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=661874 OG324_RS12275 WP_327427889.1 2637830..2639959(-) (uvrB) [Streptomyces sp. NBC_01236]
ATGCGGCCCGTATCCAAGATCGAACGTTCGGTGGCGCCCTTCGAGGTCGTCAGCTCCTACCAGCCGAGTGGTGACCAGCC
CACGGCCATCGCCGAGCTGGAGAAGCGCATCCGCGCAGGTGAGAAGGATGTCGTTCTGCTGGGAGCGACCGGCACCGGCA
AGTCCGCCACCACGGCGTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTGATGGCCCCGAACAAGACCCTGGCCGCC
CAGCTGGCGAACGAATTCCGCGAGCTGCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTTCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGCCTGCGCCACT
CCGCGACCAACTCGCTGCTGACCCGCCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACGCCG
CAGGAGTACGTGGACCGGATGGTCCCGCTCAAGGTCGGCGACGAGATCGACCGCGACGACCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACATGGCGTTCGCACGAGGCACCTTCCGGGTCCGTGGCGACACCATCGAGATCTTCCCGG
TCTACGAAGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACGCTGCACCCGCTCACCGGC
GAGGTCATGAGCGACGACAACCAGATCTATGTGTTCCCGGCCTCCCACTACGTGGCGGGCCCCGAGCGCATGGAGCGCGC
CGTCAACGACATCGAGAAGGAACTGGGGGAGCGCCTCACCGAGCTGGAGAAGCAGAGCAAGCTCCTGGAGGCCCAGCGCC
TGCGCATGCGCACGACGTACGACATCGAGATGCTCCGCCAGATCGGTTCCTGCTCCGGCGTAGAGAACTACTCGATGCAC
TTCGACGGCCGCGAACCCGGCTCCCCGCCGAACACCCTGATCGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCGCACGTCACCGTTCCCCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGCAAGCGCACTCTTGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTCGACAACCGCCCCCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGCCAGACCGTGTACCTG
TCCGCGACTCCGGGCAAGTACGAGCTCTCCCGCGGGGACGGCTTCGTCGAGCAGATCATCCGTCCCACCGGCCTGATCGA
CCCCGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTCGGCATCCAGGTG
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCGTCGAGCTGCTGCGCGAACTGCGCGCGGGCGAGTTCGACGTCCT
GGTGGGCATCAACCTCCTCCGCGAAGGCCTCGACCTGCCCGAGGTGTCCCTGGTGTCGATCCTCGACGCCGACAAGGAAG
GCTTCCTGCGCTCGGGCACCTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAATGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGGTCGCGTACAACAC
GGAGCGGGGTATCGACCCGCAGCCCCTCCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGACGTCGACA
CGGAGCAGCTGCTCGGCTCGGGCTACCGCAAGACGAAGGACGGCAAGGGCGCCAAGGCCCTGGTGCCCGCGCTCGGCGGC
AAGGCGGCCAAGTCCGCCAAGGGCAAGGCCAAGGAGACGGTGCCGACCGACCGCCCCGCGGCCGAACTCGCCGGGCAGAT
CGAGGAGATGACGGAGCGGATGCGCGCTGCCGCGGCCGATCTCCAGTTCGAGATCGCGGCCCGGCTACGTGACGAGGTGT
CCGAGATGAAGAAGGAGCTGCGCCAGATGAAGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(169-257)

Type III restriction enzyme, res subunit (ResIII)

(24-134)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)

UvrB/uvrC motif (UVR)

(666-698)

Ultra-violet resistance protein B (UvrB)

(559-600)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.226

96.615

0.553
  uvrB Streptococcus pneumoniae R6

57.226

96.615

0.553
  uvrB Streptococcus pneumoniae D39

57.226

96.615

0.553