Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   MM522_RS09950 Genome accession   NZ_CP093067
Coordinates   1957548..1958585 (-) Length   345 a.a.
NCBI ID   WP_101172386.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATC-3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1952548..1963585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS09900 (MM522_09900) tasA 1952646..1953431 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  MM522_RS09905 (MM522_09905) sipW 1953495..1954067 (-) 573 WP_003246088.1 signal peptidase I -
  MM522_RS09910 (MM522_09910) tapA 1954051..1954812 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  MM522_RS09915 (MM522_09915) yqzG 1955084..1955410 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MM522_RS09920 (MM522_09920) spoIIT 1955452..1955631 (-) 180 WP_003230176.1 YqzE family protein -
  MM522_RS09925 (MM522_09925) comGG 1955702..1956076 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  MM522_RS09930 (MM522_09930) comGF 1956077..1956460 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  MM522_RS09935 (MM522_09935) comGE 1956486..1956833 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  MM522_RS09940 (MM522_09940) comGD 1956817..1957248 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  MM522_RS09945 (MM522_09945) comGC 1957238..1957534 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  MM522_RS09950 (MM522_09950) comGB 1957548..1958585 (-) 1038 WP_101172386.1 comG operon protein ComGB Machinery gene
  MM522_RS09955 (MM522_09955) comGA 1958572..1959642 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  MM522_RS09960 (MM522_09960) - 1959855..1960052 (-) 198 WP_029726717.1 hypothetical protein -
  MM522_RS09965 (MM522_09965) corA 1960054..1961007 (-) 954 WP_004399136.1 magnesium transporter CorA -
  MM522_RS09970 (MM522_09970) yqhB 1961150..1962478 (+) 1329 WP_029726716.1 hemolysin family protein -
  MM522_RS09975 (MM522_09975) rsbRD 1962531..1963367 (-) 837 WP_003230149.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39646.10 Da        Isoelectric Point: 9.7153

>NTDB_id=661847 MM522_RS09950 WP_101172386.1 1957548..1958585(-) (comGB) [Bacillus subtilis strain ATC-3]
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTGSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQAIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSPFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=661847 MM522_RS09950 WP_101172386.1 1957548..1958585(-) (comGB) [Bacillus subtilis strain ATC-3]
ATGAAAAAGATTAGAAAAGTCTGGTCATTAAAGGATCAAGCCAGGTTATTAAAGCGGCTCGGTGAAATGACTGCGGGCGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGGTTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCAATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGGCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

99.071

93.623

0.928