Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG251_RS30330 Genome accession   NZ_CP108508
Coordinates   6805481..6806278 (-) Length   265 a.a.
NCBI ID   WP_073721923.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01237     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6800481..6811278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG251_RS30315 (OG251_30325) - 6800661..6801380 (+) 720 WP_326680075.1 GNAT family N-acetyltransferase -
  OG251_RS30320 (OG251_30330) - 6801441..6803333 (+) 1893 WP_326680076.1 IucA/IucC family siderophore biosynthesis protein -
  OG251_RS30325 (OG251_30335) - 6803384..6805354 (+) 1971 WP_326680077.1 ATP-dependent DNA helicase -
  OG251_RS30330 (OG251_30340) dinR/lexA 6805481..6806278 (-) 798 WP_073721923.1 transcriptional repressor LexA Regulator
  OG251_RS30335 (OG251_30345) nrdR 6806778..6807290 (+) 513 WP_326680078.1 transcriptional regulator NrdR -
  OG251_RS30340 (OG251_30350) - 6807456..6810353 (+) 2898 WP_326680079.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28790.50 Da        Isoelectric Point: 7.0668

>NTDB_id=661847 OG251_RS30330 WP_073721923.1 6805481..6806278(-) (dinR/lexA) [Streptomyces sp. NBC_01237]
MTTTADSATITAQDHRSQSRLEPVHAMNDSVTNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQQTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFRREDGHVWLLPH
NAAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=661847 OG251_RS30330 WP_073721923.1 6805481..6806278(-) (dinR/lexA) [Streptomyces sp. NBC_01237]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCAAT
GAATGACTCAGTCACGAACACGGAGGGACCAGAGCCCGCGCGCCCTGCGCGCTCATTGCCCGGCCGGCCCCCAGGAATCC
GTGCGGACAGTTCTGGGCTCACGGATCGGCAACGGCGGGTGATCGAGGTAATTCGGGATTCCGTGCAGCGCCGCGGATAC
CCGCCGTCGATGCGGGAAATCGGTCAGGCGGTGGGACTGTCCAGCACCTCTTCCGTCGCCCATCAGCTGATGGCCCTGGA
GCGCAAGGGCTTTCTGCGGCGCGATCCGCACCGCCCGCGCGCCTATGAAGTCCGTGGATCCGATCAGCCCAGCACCCAGC
AGACGGACACCACGGGCAAGCCCGCCGCTTCCTATGTGCCACTGGTGGGCCGGATCGCCGCCGGTGGGCCGATCCTCGCG
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTCGGCGACGGAGAGCTGTTCGTCCTGAAGGTCGTCGG
TGACTCGATGATCGAAGCGGCGATCTGCGACGGCGACTGGGTCACCGTACGGCGCCAGCCCGTCGCCGAGAACGGGGACA
TCGTGGCCGCGATGCTGGACGGCGAGGCGACCGTCAAGCGTTTCCGGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCAC
AACGCCGCGTATCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(58-121)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37