Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   SRT_RS04580 Genome accession   NZ_AP014612
Coordinates   900205..900894 (+) Length   229 a.a.
NCBI ID   WP_128833213.1    Uniprot ID   A0A1L7LJD4
Organism   Streptococcus troglodytae strain TKU 31     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 895205..905894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRT_RS04550 (SRT_08850) - 895938..896171 (+) 234 WP_128833209.1 DUF1858 domain-containing protein -
  SRT_RS04555 (SRT_08860) - 896171..897534 (+) 1364 Protein_848 DUF438 domain-containing protein -
  SRT_RS04560 (SRT_08880) - 897660..898388 (-) 729 WP_128833210.1 ABC transporter permease -
  SRT_RS04565 (SRT_08890) - 898385..899125 (-) 741 WP_128833211.1 ABC transporter permease -
  SRT_RS04570 (SRT_08900) - 899125..900033 (-) 909 WP_128833212.1 ABC transporter ATP-binding protein -
  SRT_RS04580 (SRT_08910) scnR 900205..900894 (+) 690 WP_128833213.1 response regulator transcription factor Regulator
  SRT_RS04585 (SRT_08930) - 900895..902204 (+) 1310 Protein_853 sensor histidine kinase -
  SRT_RS04590 - 902374..903209 (+) 836 Protein_854 alpha/beta fold hydrolase -
  SRT_RS04595 (SRT_08960) truB 903211..904088 (+) 878 Protein_855 tRNA pseudouridine(55) synthase TruB -
  SRT_RS04600 (SRT_08970) - 904119..905051 (+) 933 WP_128833214.1 bifunctional riboflavin kinase/FAD synthetase -
  SRT_RS04605 (SRT_08980) spx 905099..905512 (+) 414 WP_128833215.1 transcriptional regulator Spx -
  SRT_RS04610 - 905505..905782 (+) 278 Protein_858 UPF0223 family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26265.35 Da        Isoelectric Point: 4.6988

>NTDB_id=66174 SRT_RS04580 WP_128833213.1 900205..900894(+) (scnR) [Streptococcus troglodytae strain TKU 31]
MNYKEKEILILDDNPEILEMVQESLSIAGFNNLTSVQSQKEALEQFGEKSFDLAILDIMLPEGSGFEVLKDIRKTSTIPV
LFLSAISDIEKQYQGFELGADDYIVKPFRPRDLELRILSILKRSYPEKDDTLILPTCQVNFGQALITKGELEIQLTAKEY
SILKVLYDNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPVSLITIKGLGYQLRVD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=66174 SRT_RS04580 WP_128833213.1 900205..900894(+) (scnR) [Streptococcus troglodytae strain TKU 31]
ATGAATTATAAAGAGAAAGAAATCTTAATTTTAGATGACAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAGCAT
TGCTGGCTTTAACAATCTAACAAGTGTGCAATCACAAAAGGAAGCTTTGGAACAATTTGGAGAAAAATCCTTTGATTTAG
CCATTTTAGATATCATGTTACCTGAAGGTTCAGGCTTTGAAGTTCTAAAAGACATCCGTAAGACCTCTACAATTCCTGTT
TTGTTTTTGTCGGCAATTTCAGATATTGAAAAACAATATCAAGGTTTTGAGTTGGGAGCTGACGATTATATTGTTAAGCC
TTTTCGACCAAGAGATTTGGAACTACGAATCCTTTCTATTTTAAAAAGATCCTATCCTGAAAAGGATGATACCCTTATTT
TACCTACGTGTCAGGTCAACTTTGGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGTTGACAGCTAAGGAATAC
AGTATTCTTAAGGTCTTATATGACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAGGTTTGGGGCTTGCA
ATATCAAGGTTATGAAAATACTATGATGGCACATATTCGCAAAATTCGACAAAAGATTGAAGCCAATCCTTCTAAACCAG
TCAGTCTTATTACTATTAAGGGGCTGGGCTACCAGTTACGGGTGGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L7LJD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

90.351

99.563

0.9
  micA Streptococcus pneumoniae Cp1015

38.075

100

0.397

Multiple sequence alignment