Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MME58_RS07935 Genome accession   NZ_CP092923
Coordinates   1751925..1754141 (+) Length   738 a.a.
NCBI ID   WP_055007230.1    Uniprot ID   A0A0Q0AQ70
Organism   Pseudomonas syringae pv. tagetis strain ICMP 4091     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1746925..1759141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MME58_RS07920 (MME58_07920) - 1749262..1749885 (+) 624 WP_054984627.1 glutathione S-transferase -
  MME58_RS07925 (MME58_07925) - 1750070..1751002 (+) 933 WP_054984628.1 ABC transporter ATP-binding protein -
  MME58_RS07930 (MME58_07930) - 1750999..1751787 (+) 789 WP_054984629.1 ABC transporter permease -
  MME58_RS07935 (MME58_07935) comA 1751925..1754141 (+) 2217 WP_055007230.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MME58_RS07940 (MME58_07940) exbB 1754184..1754900 (+) 717 WP_054984631.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MME58_RS07945 (MME58_07945) - 1754897..1755328 (+) 432 WP_002552677.1 ExbD/TolR family protein -
  MME58_RS07950 (MME58_07950) lpxK 1755328..1756323 (+) 996 WP_054984632.1 tetraacyldisaccharide 4'-kinase -
  MME58_RS07955 (MME58_07955) - 1756341..1756526 (+) 186 WP_054984633.1 Trm112 family protein -
  MME58_RS07960 (MME58_07960) kdsB 1756523..1757287 (+) 765 WP_054984634.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MME58_RS07965 (MME58_07965) murB 1757322..1758341 (+) 1020 WP_055007231.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80176.40 Da        Isoelectric Point: 10.5944

>NTDB_id=661159 MME58_RS07935 WP_055007230.1 1751925..1754141(+) (comA) [Pseudomonas syringae pv. tagetis strain ICMP 4091]
MRTGMIALALGLLALRFLPALPPTWLLLLMPILALMLLPFRSYPLAFFLLGFTWACVSAQWALNDRLAHRLDGQTLWLQG
KVVGLPSVAEGVVRFELQGARSRRATLPARIRVAWYGGPQVSSGERWRLAVKLKRPGGLVNPDAFDYEAWLLAQRIGATG
TVVDGQRLAPARGAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLTSADWQVLQDTGTVHLLVISGQHIGLLAGVVYAL
VAALARWGLWPRGLPWLPWACVLAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNTVLVFEPL
VTLQPGFWLSFAAVAILVLIFSGRLGTWSLWQSWTRAQWLIAIGLLPLLLALNLPVSLSGPLANLLAVPWVSVIVLPPAL
IGTLLLPVPVAGEGLLWLAGGALEWLFVFLGRVAAFLPAWLPSAMPGWAWLLSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLDSVPAGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHADADHAGGA
VAVHQAFPVARVLGGELARLAPQLDARLCESGARWTWDGVVFSTWRWEQGPDGNPASCILSADAGGERLLLSGDIDVDAE
RAAIDSGFDLRAHWLQAPHHGSRTSSSKAFLQAVAPIGVLISRGRNNSFGHPHPLVMARYRWLGIAHYDSAELGAVRLQL
GTFGAPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=661159 MME58_RS07935 WP_055007230.1 1751925..1754141(+) (comA) [Pseudomonas syringae pv. tagetis strain ICMP 4091]
ATGCGCACAGGGATGATCGCGCTCGCGCTGGGGCTTCTTGCCCTGCGTTTTCTACCGGCCTTGCCGCCCACCTGGCTATT
GCTGCTGATGCCGATACTGGCATTGATGCTGTTGCCGTTTCGGAGCTATCCGCTGGCCTTCTTCCTGCTCGGATTCACAT
GGGCATGCGTGTCGGCGCAATGGGCGTTGAATGATCGTCTGGCGCATCGTCTGGATGGTCAGACGCTGTGGCTGCAGGGC
AAGGTGGTCGGTTTGCCCAGTGTCGCCGAAGGTGTGGTGCGTTTCGAACTGCAAGGGGCCAGATCGCGGCGAGCGACGTT
GCCTGCGCGAATCCGTGTGGCATGGTATGGCGGTCCGCAGGTCAGCAGCGGGGAACGCTGGCGCCTGGCGGTCAAGCTCA
AGCGGCCGGGTGGACTGGTCAATCCCGATGCCTTCGATTACGAGGCGTGGCTGTTGGCCCAGCGCATCGGGGCGACTGGC
ACGGTGGTGGATGGCCAACGGCTGGCGCCTGCGCGTGGGGCCTGGCGCGACGCTATTCGTCAGCGTTTGCTGGCGGTCGA
TGCGCAGGGTCGGGAGGGCGGTCTGGCGGCGCTGGTGCTGGGCGATGGCTCCGGGCTGACAAGCGCCGACTGGCAGGTGT
TGCAGGACACCGGCACCGTGCACCTGCTGGTAATCTCCGGTCAGCACATCGGGCTGCTGGCCGGCGTGGTCTATGCGCTG
GTCGCAGCTCTCGCACGCTGGGGACTGTGGCCACGGGGCTTGCCCTGGCTGCCCTGGGCCTGTGTGCTGGCGTTCAGCGC
GGCATTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTGCGACGTGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGTTTGCGTTTTCGCCATCTGGGCGTGGTCTGGCCTTTGCTGCTGTCATTCAACACGGTGCTGGTCTTCGAGCCACTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCTTTTGCGGCGGTTGCCATTCTGGTGCTGATTTTCAGTGGCCGCCTCGGGAC
CTGGAGCCTGTGGCAAAGCTGGACACGTGCGCAGTGGTTGATCGCGATTGGTTTGCTGCCGCTTCTGCTGGCGCTGAACC
TGCCGGTCAGTCTCAGTGGCCCGTTGGCCAATTTGCTTGCGGTGCCGTGGGTCAGCGTGATCGTCCTGCCGCCCGCGTTG
ATCGGAACCCTGTTGCTGCCTGTTCCTGTGGCAGGCGAAGGCTTGCTCTGGCTGGCCGGAGGCGCGCTGGAGTGGCTGTT
CGTATTTCTCGGCCGGGTTGCCGCATTCTTGCCTGCCTGGCTGCCCAGTGCAATGCCGGGTTGGGCGTGGTTGCTGAGTC
TGCTCGGAGCTTTGCTTTTACTGCTGCCTAAAGGCGTGCCGATGCGCCCGTTGGGCTGGCCACTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGACTCAGTACCTGCGGGGCAGGTAGAGGTCTTGCAACTGGACGTAGGGCAAGGCCTTGCCATTCTTCT
GCGCACTCGTAATCACACACTTTTGTACGATGCCGGTCCGCGTTTTGGCGAGTTCGACATCGGTCAGCGTGTGGTCGTGC
CTGCCATGCGCAAGGCCGGTGTCCGTCATCTGGACCTGATGTTGATCAGCCACGCAGACGCCGATCATGCCGGGGGTGCA
GTGGCAGTTCATCAGGCATTTCCGGTCGCCCGCGTGCTGGGTGGCGAGCTGGCCAGACTTGCTCCGCAGCTCGATGCCCG
GCTGTGTGAGAGTGGCGCACGCTGGACGTGGGATGGCGTGGTGTTCTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ATCCGGCGTCCTGTATCCTGAGTGCCGATGCCGGGGGCGAGCGTCTGTTGCTGTCCGGCGATATCGACGTCGACGCTGAG
CGGGCGGCAATCGACAGTGGATTCGATCTTCGTGCTCACTGGCTGCAGGCCCCGCATCACGGCAGCCGGACCTCGTCATC
CAAAGCGTTTCTGCAGGCCGTTGCACCTATCGGTGTGCTGATTTCCCGTGGCCGCAATAACTCTTTCGGTCACCCGCATC
CGTTGGTCATGGCGCGCTATCGATGGTTGGGCATCGCCCATTACGACAGTGCCGAGCTGGGCGCTGTGCGTCTGCAACTG
GGTACGTTCGGTGCGCCGCAGGCAGAACGTGCACAACGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0AQ70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.04

97.154

0.612
  comA Ralstonia pseudosolanacearum GMI1000

33.725

100

0.389