Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MME58_RS07940 Genome accession   NZ_CP092923
Coordinates   1754184..1754900 (+) Length   238 a.a.
NCBI ID   WP_054984631.1    Uniprot ID   A0A0P9SB63
Organism   Pseudomonas syringae pv. tagetis strain ICMP 4091     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1749184..1759900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MME58_RS07920 (MME58_07920) - 1749262..1749885 (+) 624 WP_054984627.1 glutathione S-transferase -
  MME58_RS07925 (MME58_07925) - 1750070..1751002 (+) 933 WP_054984628.1 ABC transporter ATP-binding protein -
  MME58_RS07930 (MME58_07930) - 1750999..1751787 (+) 789 WP_054984629.1 ABC transporter permease -
  MME58_RS07935 (MME58_07935) comA 1751925..1754141 (+) 2217 WP_055007230.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MME58_RS07940 (MME58_07940) exbB 1754184..1754900 (+) 717 WP_054984631.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MME58_RS07945 (MME58_07945) - 1754897..1755328 (+) 432 WP_002552677.1 ExbD/TolR family protein -
  MME58_RS07950 (MME58_07950) lpxK 1755328..1756323 (+) 996 WP_054984632.1 tetraacyldisaccharide 4'-kinase -
  MME58_RS07955 (MME58_07955) - 1756341..1756526 (+) 186 WP_054984633.1 Trm112 family protein -
  MME58_RS07960 (MME58_07960) kdsB 1756523..1757287 (+) 765 WP_054984634.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MME58_RS07965 (MME58_07965) murB 1757322..1758341 (+) 1020 WP_055007231.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25848.36 Da        Isoelectric Point: 7.9120

>NTDB_id=661160 MME58_RS07940 WP_054984631.1 1754184..1754900(+) (exbB) [Pseudomonas syringae pv. tagetis strain ICMP 4091]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDARIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=661160 MME58_RS07940 WP_054984631.1 1754184..1754900(+) (exbB) [Pseudomonas syringae pv. tagetis strain ICMP 4091]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCTGCGGGCATTATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGCATCACGCCAC
CGCATCTGCTTGGACAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTGGACAGCGAAAAGCTCAAGCAACTGCGTGCCGAC
TCGCCACTGGGTGAAATCCTCGCTGCCGGGCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGA
AGCCGCTGCCCGGGTTATCCATGACCTGGAGCGCTATCTGAGCGCACTGGGTTCGATTGCTGCAATGGCTCCGTTGCTTG
GCCTGCTGGGTACCGTGTTGGGCATGATCGATATTTTTGGCTCGTTCAACAGCTCAGGTGCCACTGCCAATGCCGGTGTG
CTGGCAGGTGGTATTTCCAAAGCGCTGATCTGTACCGCATCAGGGCTTATCGTGGCGATTCCCGCGATTTTCTTTCATCG
CTTTCTGCAAAGCCGCGTCGATGAGCTGGTGGTCGGCATGGAGCAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAGGATCGACCTCAAGTCTCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P9SB63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.097

86.555

0.693