Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MME54_RS18580 Genome accession   NZ_CP092918
Coordinates   4194123..4196339 (-) Length   738 a.a.
NCBI ID   WP_054984630.1    Uniprot ID   A0A0P9RRS9
Organism   Pseudomonas syringae pv. helianthi strain LMG 5067     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4189123..4201339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MME54_RS18550 (MME54_18550) murB 4189923..4190942 (-) 1020 WP_054984635.1 UDP-N-acetylmuramate dehydrogenase -
  MME54_RS18555 (MME54_18555) kdsB 4190977..4191741 (-) 765 WP_054984634.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MME54_RS18560 (MME54_18560) - 4191738..4191923 (-) 186 WP_054984633.1 Trm112 family protein -
  MME54_RS18565 (MME54_18565) lpxK 4191941..4192936 (-) 996 WP_054984632.1 tetraacyldisaccharide 4'-kinase -
  MME54_RS18570 (MME54_18570) - 4192936..4193367 (-) 432 WP_002552677.1 ExbD/TolR family protein -
  MME54_RS18575 (MME54_18575) exbB 4193364..4194080 (-) 717 WP_054984631.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MME54_RS18580 (MME54_18580) comA 4194123..4196339 (-) 2217 WP_054984630.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MME54_RS18585 (MME54_18585) - 4196477..4197265 (-) 789 WP_054984629.1 ABC transporter permease -
  MME54_RS18590 (MME54_18590) - 4197262..4198194 (-) 933 WP_054984628.1 ABC transporter ATP-binding protein -
  MME54_RS18595 (MME54_18595) - 4198379..4199002 (-) 624 WP_054984627.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80221.47 Da        Isoelectric Point: 10.4746

>NTDB_id=661127 MME54_RS18580 WP_054984630.1 4194123..4196339(-) (comA) [Pseudomonas syringae pv. helianthi strain LMG 5067]
MRTGMIALALGLLALRFLPALPPTWLLLLMPILALMLLPFRSYPLAFFLLGFTWACVSAQWALNDRLAHRLDGQTLWLQG
KVVGLPSVAEGVVRFELQGARSRRATLPARIRVAWYGGPQVSSGERWHLAVKLKRPGGLVNPDAFDYEAWLLAQRIGATG
TVVDGQRLAPARGAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLTSADWQVLQDTGTVHLLVISGQHIGLLAGVVYAL
VAALARWGLWPRGLPWLPWACVLAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLMSFNTVLVFEPL
VTLQPGFWLSFAAVAILVLIFSGRLGTWSLWQSWTRAQWLIAIGLLPLLLALNLPVSLSGPLANLLAVPWVSVIVLPPAL
IGTLLLPVPVAGEGLLWLAGGALEWLFVFLGRVAAFLPAWLPSAMPGWAWLLSLLGALLLLLPKGVPMRPMGWPLLLLCV
FPPLDSVPAGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHADADHAGGA
VAVHQAFPVARVLGGELARLAPQLDARLCESGARWTWDGVVFSTWRWEQGPDGNPASCILSVDAGGERLLLSGDIDVDAE
RAAIDSGFDLRAHWLQAPHHGSRTSSSKAFLQAVAPIGVLISRGRNNSFGHPHPLVMARYRWLGIAHYDSAELGAVRLQL
GTFGAPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=661127 MME54_RS18580 WP_054984630.1 4194123..4196339(-) (comA) [Pseudomonas syringae pv. helianthi strain LMG 5067]
ATGCGCACAGGGATGATCGCGCTCGCGCTGGGGCTTCTTGCCCTGCGTTTTCTACCGGCCTTGCCGCCCACCTGGCTATT
GCTGCTGATGCCGATACTGGCATTGATGCTGTTGCCGTTTCGGAGCTATCCGCTGGCCTTCTTCCTGCTCGGATTCACAT
GGGCATGCGTGTCGGCGCAATGGGCGTTGAATGATCGTCTGGCGCATCGTCTGGATGGTCAGACGCTGTGGCTGCAGGGC
AAGGTGGTCGGTTTGCCCAGTGTCGCCGAAGGTGTGGTGCGTTTCGAACTGCAAGGGGCCAGATCGCGGCGAGCGACGTT
GCCTGCGCGAATCCGTGTGGCATGGTATGGCGGTCCGCAGGTCAGCAGCGGGGAACGCTGGCACCTGGCGGTCAAGCTCA
AGCGGCCGGGTGGACTGGTCAATCCCGATGCCTTCGATTACGAGGCGTGGCTGTTGGCCCAGCGCATCGGGGCGACTGGC
ACGGTGGTGGATGGCCAACGGCTGGCGCCTGCGCGTGGGGCTTGGCGCGACGCTATTCGTCAGCGTTTGCTGGCGGTCGA
TGCGCAGGGTCGGGAGGGCGGTCTGGCGGCGCTGGTGCTGGGCGATGGCTCCGGGCTGACAAGCGCCGACTGGCAGGTGT
TGCAGGACACCGGCACCGTGCACCTGCTGGTAATCTCCGGTCAGCACATCGGGCTGCTGGCCGGCGTGGTCTATGCGCTG
GTCGCAGCTCTCGCACGCTGGGGACTGTGGCCACGGGGCTTGCCCTGGCTGCCCTGGGCCTGTGTGCTGGCGTTCAGCGC
GGCATTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTGCGACGTGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGTTTGCGTTTTCGCCATCTGGGCGTGGTCTGGCCTTTGCTGATGTCATTCAACACGGTGCTGGTCTTCGAGCCACTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCTTTTGCGGCGGTTGCCATTCTGGTGCTGATTTTCAGTGGCCGCCTCGGGAC
CTGGAGCCTGTGGCAAAGCTGGACACGTGCGCAGTGGTTGATCGCGATTGGTTTGCTGCCGCTTCTGCTGGCGCTGAACC
TGCCGGTCAGTCTCAGTGGCCCGTTGGCCAATTTGCTTGCGGTGCCGTGGGTCAGCGTGATCGTCCTGCCGCCCGCGTTG
ATCGGAACCCTGTTGCTGCCTGTTCCTGTGGCAGGCGAAGGCCTGCTCTGGCTGGCCGGAGGCGCGCTGGAGTGGCTGTT
CGTATTTCTCGGCCGGGTTGCCGCATTCTTGCCTGCCTGGCTGCCCAGTGCAATGCCGGGTTGGGCGTGGTTGCTGAGTC
TGCTCGGAGCTTTGCTTTTACTGCTGCCTAAAGGCGTGCCGATGCGCCCTATGGGCTGGCCACTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGACTCAGTACCTGCGGGGCAGGTAGAGGTCTTGCAACTGGACGTAGGGCAAGGCCTTGCCATTCTTCT
GCGCACTCGTAATCACACACTTTTGTACGATGCCGGTCCGCGTTTTGGCGAGTTCGACATCGGTCAGCGTGTGGTCGTGC
CTGCCATGCGCAAGGCCGGTGTCCGTCATCTGGACCTGATGTTGATCAGCCACGCAGACGCCGATCATGCCGGGGGGGCA
GTGGCAGTTCATCAGGCATTTCCGGTCGCCCGCGTGCTGGGTGGCGAGCTGGCCAGACTTGCTCCGCAGCTCGATGCCCG
GCTGTGTGAGAGTGGCGCACGCTGGACGTGGGATGGCGTGGTGTTCTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ATCCGGCGTCCTGTATCCTGAGTGTCGATGCCGGGGGCGAGCGTCTGTTGCTGTCCGGCGATATCGACGTCGACGCTGAG
CGGGCGGCAATCGACAGTGGATTCGATCTTCGTGCTCACTGGCTGCAGGCCCCGCATCACGGCAGCCGGACCTCGTCATC
CAAAGCGTTTCTGCAGGCCGTTGCACCTATCGGTGTGCTGATTTCCCGTGGCCGCAATAACTCTTTCGGTCACCCGCATC
CGTTGGTCATGGCGCGCTATCGATGGTTGGGCATCGCCCATTACGACAGTGCCGAGCTGGGCGCTGTGCGTCTGCAACTG
GGTACGTTCGGTGCGCCGCAGGCAGAACGTGCACAACGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-674)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P9RRS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.04

97.154

0.612
  comA Ralstonia pseudosolanacearum GMI1000

33.725

100

0.389