Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MME54_RS18575 Genome accession   NZ_CP092918
Coordinates   4193364..4194080 (-) Length   238 a.a.
NCBI ID   WP_054984631.1    Uniprot ID   A0A0P9SB63
Organism   Pseudomonas syringae pv. helianthi strain LMG 5067     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4188364..4199080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MME54_RS18550 (MME54_18550) murB 4189923..4190942 (-) 1020 WP_054984635.1 UDP-N-acetylmuramate dehydrogenase -
  MME54_RS18555 (MME54_18555) kdsB 4190977..4191741 (-) 765 WP_054984634.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MME54_RS18560 (MME54_18560) - 4191738..4191923 (-) 186 WP_054984633.1 Trm112 family protein -
  MME54_RS18565 (MME54_18565) lpxK 4191941..4192936 (-) 996 WP_054984632.1 tetraacyldisaccharide 4'-kinase -
  MME54_RS18570 (MME54_18570) - 4192936..4193367 (-) 432 WP_002552677.1 ExbD/TolR family protein -
  MME54_RS18575 (MME54_18575) exbB 4193364..4194080 (-) 717 WP_054984631.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MME54_RS18580 (MME54_18580) comA 4194123..4196339 (-) 2217 WP_054984630.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MME54_RS18585 (MME54_18585) - 4196477..4197265 (-) 789 WP_054984629.1 ABC transporter permease -
  MME54_RS18590 (MME54_18590) - 4197262..4198194 (-) 933 WP_054984628.1 ABC transporter ATP-binding protein -
  MME54_RS18595 (MME54_18595) - 4198379..4199002 (-) 624 WP_054984627.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25848.36 Da        Isoelectric Point: 7.9120

>NTDB_id=661126 MME54_RS18575 WP_054984631.1 4193364..4194080(-) (exbB) [Pseudomonas syringae pv. helianthi strain LMG 5067]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDARIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=661126 MME54_RS18575 WP_054984631.1 4193364..4194080(-) (exbB) [Pseudomonas syringae pv. helianthi strain LMG 5067]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCTGCGGGCATTATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGCATCACGCCAC
CGCATCTGCTTGGACAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTGGACAGCGAAAAGCTCAAGCAACTGCGTGCCGAC
TCGCCACTGGGTGAAATCCTCGCTGCCGGGCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGA
AGCCGCTGCCCGGGTTATCCATGACCTGGAGCGCTATCTGAGCGCACTGGGTTCGATTGCTGCAATGGCTCCGTTGCTTG
GCCTGCTGGGTACCGTGTTGGGCATGATCGATATTTTTGGCTCGTTCAACAGCTCAGGTGCCACTGCCAATGCCGGTGTG
CTGGCAGGTGGTATTTCCAAAGCGCTGATCTGTACCGCATCAGGGCTTATCGTGGCGATTCCCGCGATTTTCTTTCATCG
CTTTCTGCAAAGCCGCGTCGATGAGCTGGTGGTCGGCATGGAGCAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAGGATCGACCTCAAGTCTCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P9SB63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.097

86.555

0.693