NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	MKW86_RS02060	Genome accession	NZ_CP092906
Coordinates	445937..446809 (-)	Length	290 a.a.
NCBI ID	WP_065475375.1	Uniprot ID	-
Organism	Aeromonas hydrophila strain LP0103
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 440937..451809

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MKW86_RS02035 (MKW86_02035)	-	442673..443857 (+)	1185	WP_241417177.1	tetratricopeptide repeat protein	-
MKW86_RS02040 (MKW86_02040)	mutT	443866..444279 (+)	414	WP_174892455.1	8-oxo-dGTP diphosphatase MutT	-
MKW86_RS02045 (MKW86_02045)	yacG	444340..444534 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
MKW86_RS02050 (MKW86_02050)	zapD	444544..445266 (-)	723	WP_043160635.1	cell division protein ZapD	-
MKW86_RS02055 (MKW86_02055)	coaE	445304..445918 (-)	615	WP_073351951.1	dephospho-CoA kinase	-
MKW86_RS02060 (MKW86_02060)	pilD	445937..446809 (-)	873	WP_065475375.1	A24 family peptidase	Machinery gene
MKW86_RS02065 (MKW86_02065)	pilC	446832..448073 (-)	1242	WP_011707570.1	type II secretion system F family protein	Machinery gene
MKW86_RS02070 (MKW86_02070)	pilB	448189..449895 (-)	1707	WP_073351950.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
MKW86_RS02075 (MKW86_02075)	tapA	449899..450342 (-)	444	WP_073352603.1	type IVa pilus major pilin TapA	-
MKW86_RS02080 (MKW86_02080)	nadC	450665..451522 (-)	858	WP_130631564.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32484.77 Da Isoelectric Point: 6.7410

                                >NTDB_id=661021 MKW86_RS02060 WP_065475375.1 445937..446809(-) (pilD) [Aeromonas hydrophila strain LP0103]

MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA

ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLTGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL

VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=661021 MKW86_RS02060 WP_065475375.1 445937..446809(-) (pilD) [Aeromonas hydrophila strain LP0103]

ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG

CAGTTTTCTCAACGTGGTCATCCACCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA

ATCCAGAGACACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGCCACGCC

ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC

GGCCCGTTATCCTCTGGTGGAATTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCGCACCGGGCTGGGGCT

TGCTGGCCGCCCTGTTGCTCACCTGGGTACTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG

CTGACCCTGCCACTGCTGTGGGGTGGCCTGTTGTTCAATCTGACAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG

CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG

GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG

GTTGGTGCTTTCATCGGAATTGGCCTCATTCTGCTGCGCAACCATCATCAGAATAAACCCATCCCCTTCGGCCCCTATCT

GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	61.324	98.966	0.607
pilD	Vibrio campbellii strain DS40M4	55.749	98.966	0.552
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459

Detailed information NTG0661021