Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG295_RS23440 Genome accession   NZ_CP108442
Coordinates   5233555..5234622 (+) Length   355 a.a.
NCBI ID   WP_371681276.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01276     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5228555..5239622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG295_RS23415 (OG295_23430) - 5228629..5229399 (+) 771 WP_371678637.1 glucose 1-dehydrogenase -
  OG295_RS23420 (OG295_23435) - 5229494..5229658 (+) 165 WP_371678638.1 hypothetical protein -
  OG295_RS23425 (OG295_23440) - 5229704..5231785 (+) 2082 WP_371678639.1 molybdopterin oxidoreductase family protein -
  OG295_RS23430 (OG295_23445) - 5231875..5232564 (+) 690 WP_371678640.1 DUF6445 family protein -
  OG295_RS23435 (OG295_23450) - 5232561..5233265 (-) 705 WP_371678641.1 hypothetical protein -
  OG295_RS23440 (OG295_23455) rpoS 5233555..5234622 (+) 1068 WP_371681276.1 RNA polymerase sigma factor Regulator
  OG295_RS23445 (OG295_23460) rcrQ 5234689..5236611 (-) 1923 WP_371678642.1 ABC transporter ATP-binding protein Regulator
  OG295_RS23450 (OG295_23465) rcrP 5236608..5238341 (-) 1734 WP_371678643.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39295.58 Da        Isoelectric Point: 4.7136

>NTDB_id=660771 OG295_RS23440 WP_371681276.1 5233555..5234622(+) (rpoS) [Streptomyces sp. NBC_01276]
MDEAVDEAADPAAEAAEDGAAEDGAADEGPEVLEPIEHAPPPRARGAEGGGAGPSADLFRQYLREIGRIPLLTAAEEVDL
ARRVEAGLFAEEKLGGAADLDSQLAVDLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVE
KFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERVLEV
LRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIG
RIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=660771 OG295_RS23440 WP_371681276.1 5233555..5234622(+) (rpoS) [Streptomyces sp. NBC_01276]
GTGGACGAGGCCGTGGACGAAGCGGCGGATCCGGCGGCCGAGGCGGCCGAGGACGGAGCGGCCGAGGACGGAGCGGCCGA
CGAGGGGCCCGAGGTCCTGGAACCGATCGAGCACGCGCCCCCGCCCCGGGCCCGCGGCGCGGAGGGCGGCGGGGCCGGAC
CCTCCGCGGACCTCTTCCGGCAGTACCTGCGCGAGATCGGCAGGATCCCGCTGCTCACCGCCGCCGAGGAGGTCGACCTC
GCACGGCGGGTGGAAGCCGGGCTCTTCGCCGAGGAGAAGCTCGGCGGCGCCGCCGACCTCGACTCCCAGCTCGCCGTGGA
CCTCGACAGGCTCGTCGTCATGGGCCGGATGGCCAAGCGCCGGCTGATCGAATCGAACCTGCGCCTGGTCGTCTCCGTCG
CCAAGCGCTACGTCGGACGCGGCCTCACCATGCTCGACCTGGTCCAGGAGGGCAACCTCGGACTGATCCGGGCCGTCGAG
AAGTTCGACTACGCCCGCGGCTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGCGATGTCACGGGCCCTCGC
CGACCAGGCCCGCACCATCCGCGTGCCCGTCCACGTCGTGGAGCTGATCAACCGTGTCGTGCGCGTCCAGCGCCGGATGC
TCCAGGAGCGCGGCTACGAACCCACCGCCGAAGAGGTCGCCGTCCACCTGGAGCTGACCCCCGAGCGGGTGCTGGAGGTG
CTCCGCCTCGCGCAGGAGCCGGTCTCCCTGCACGCGCCGGTCGGCGAGGAGGACGACGTGGCCCTCGGCGACCTCATCGA
GGACGGCGACGCCGCCTCCCCCGTGGAGTCCGCCGCGTTCTTCCTCCTGCGCGAGCACCTGGAAGCCGTGCTGTCGACCC
TCGGGGAGCGCGAGCGCAAGGTGGTCCAGCTCCGCTACGGGCTCGCCGACGGGCGGCCGCGCACCCTGGAGGAGATCGGC
CGGATCTTCGGCGTGACCCGCGAACGGATCCGCCAGATCGAGTCCAAGACCCTCAACAAACTGCGCGACCACGCCTTCGC
CGACCAACTGCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(290-342)

Sigma-70 region 3 (Sigma70_r3)

(201-277)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 2 (Sigma70_r2)

(122-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.919

83.38

0.366