Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG295_RS23445 Genome accession   NZ_CP108442
Coordinates   5234689..5236611 (-) Length   640 a.a.
NCBI ID   WP_371678642.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01276     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5229689..5241611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG295_RS23425 (OG295_23440) - 5229704..5231785 (+) 2082 WP_371678639.1 molybdopterin oxidoreductase family protein -
  OG295_RS23430 (OG295_23445) - 5231875..5232564 (+) 690 WP_371678640.1 DUF6445 family protein -
  OG295_RS23435 (OG295_23450) - 5232561..5233265 (-) 705 WP_371678641.1 hypothetical protein -
  OG295_RS23440 (OG295_23455) rpoS 5233555..5234622 (+) 1068 WP_371681276.1 RNA polymerase sigma factor Regulator
  OG295_RS23445 (OG295_23460) rcrQ 5234689..5236611 (-) 1923 WP_371678642.1 ABC transporter ATP-binding protein Regulator
  OG295_RS23450 (OG295_23465) rcrP 5236608..5238341 (-) 1734 WP_371678643.1 ABC transporter ATP-binding protein Regulator
  OG295_RS23455 (OG295_23470) - 5238517..5239962 (-) 1446 WP_371678644.1 FGGY family carbohydrate kinase -
  OG295_RS23460 (OG295_23475) - 5240015..5240317 (-) 303 WP_371678645.1 YtxH domain-containing protein -
  OG295_RS23480 (OG295_23495) - 5240961..5241230 (-) 270 WP_371678646.1 hypothetical protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69067.48 Da        Isoelectric Point: 4.9121

>NTDB_id=660772 OG295_RS23445 WP_371678642.1 5234689..5236611(-) (rcrQ) [Streptomyces sp. NBC_01276]
MSGPGGRMMMGPAQRSMDFKGSGKRLLRQLAQDRAKLWGMVAAVFASVACAVVGPKILGEATDLVFAGIVGRQMPAGISK
EQALEGLRAKGQDGMADMLSGTDFTPGEGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQQRGEVLSRATNDIDNVGQTLQQTMGQLLNSLLTIVGVLTMMFWISPLLALVALLTVPVSIFVAAKIGKKS
QPQFVAQWKSTGALNAHIEEMYSGHTLVKVFGRQKESAAVFAEQNEELYRASFKAQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAQEQEPDAEVPERPEQLRGQVTLDKV
AFRYEPDKPLIENLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRSGIGMVLQDTWL
FGGTIAENIAYGASREVTRAEIEEAARAAHADRFVRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLASDGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=660772 OG295_RS23445 WP_371678642.1 5234689..5236611(-) (rcrQ) [Streptomyces sp. NBC_01276]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGCCCGGCCCAGAGGTCCATGGACTTCAAGGGGTCGGGCAAGCGGCTGCT
GCGGCAGCTGGCGCAGGACCGGGCCAAGCTCTGGGGCATGGTCGCGGCCGTGTTCGCGAGCGTGGCCTGCGCGGTGGTCG
GACCGAAAATCCTCGGCGAGGCCACCGACCTGGTGTTCGCCGGGATCGTCGGCCGGCAGATGCCGGCCGGCATATCCAAG
GAGCAGGCCCTGGAGGGTCTGCGCGCCAAGGGTCAGGACGGGATGGCGGACATGCTGTCCGGCACCGACTTCACCCCGGG
CGAGGGCATCGACTTCGGCGCCGTCGGGGTCGTGGCGATCTGGGCGCTGGTGGTGTTCACGCTGGCGGGGCTGCTCATGC
TGGTCGCGACGCGGCTGTCGAACCACGTCATGAACGGCACCGTGTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGCAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACGTCGG
GCAGACCCTGCAGCAGACGATGGGTCAGCTGCTGAACTCGCTGCTGACGATCGTCGGCGTGCTGACGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGCTGACCGTACCGGTCTCGATCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGAGCACCGGCGCGCTGAACGCGCACATCGAGGAGATGTACTCCGGCCACACCCT
GGTGAAGGTCTTCGGGCGGCAGAAGGAGTCGGCGGCGGTCTTCGCCGAGCAGAACGAGGAGCTCTACCGGGCCTCCTTCA
AGGCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATAGCCGTGGTC
GGCGGTCTGCGGGTGGCCTCTGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTCGAT
GCCGCTGACGCAGGTGGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCGTCGGCCGAGCGGGTGTACGAGCTGCTGG
ACGCGCAGGAGCAGGAGCCGGACGCAGAGGTTCCGGAGCGTCCGGAGCAGCTGCGCGGCCAGGTCACCCTCGACAAGGTG
GCCTTCCGCTACGAGCCCGACAAGCCGCTCATCGAGAACCTCTCGCTGAGCGTGGAGCCGGGCCAGACGGTCGCGATCGT
CGGGCCGACGGGCGCCGGCAAGACCACGCTGGTCAACCTGTTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATAGCCC
TCGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAGCTGCGCTCCGGGATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACGATCGCGGAGAACATCGCCTACGGCGCTTCGCGCGAGGTCACCCGCGCGGAGATCGAGGAGGCCGCGCG
GGCGGCGCACGCCGACCGCTTCGTCCGCACCCTGCCGGACGGCTACGACACGGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACGATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTGGAACAGGGCACCC
ACGAAGAGCTGCTGGCCTCGGACGGCGCGTACGCGCGCCTGTACGCGGCGCAGTTCGCCCAGGCGGTCGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.388

96.719

0.391