Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG295_RS23450 Genome accession   NZ_CP108442
Coordinates   5236608..5238341 (-) Length   577 a.a.
NCBI ID   WP_371678643.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01276     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5231608..5243341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG295_RS23430 (OG295_23445) - 5231875..5232564 (+) 690 WP_371678640.1 DUF6445 family protein -
  OG295_RS23435 (OG295_23450) - 5232561..5233265 (-) 705 WP_371678641.1 hypothetical protein -
  OG295_RS23440 (OG295_23455) rpoS 5233555..5234622 (+) 1068 WP_371681276.1 RNA polymerase sigma factor Regulator
  OG295_RS23445 (OG295_23460) rcrQ 5234689..5236611 (-) 1923 WP_371678642.1 ABC transporter ATP-binding protein Regulator
  OG295_RS23450 (OG295_23465) rcrP 5236608..5238341 (-) 1734 WP_371678643.1 ABC transporter ATP-binding protein Regulator
  OG295_RS23455 (OG295_23470) - 5238517..5239962 (-) 1446 WP_371678644.1 FGGY family carbohydrate kinase -
  OG295_RS23460 (OG295_23475) - 5240015..5240317 (-) 303 WP_371678645.1 YtxH domain-containing protein -
  OG295_RS23480 (OG295_23495) - 5240961..5241230 (-) 270 WP_371678646.1 hypothetical protein -
  OG295_RS23485 (OG295_23500) - 5241500..5242486 (+) 987 WP_371678647.1 LuxR C-terminal-related transcriptional regulator -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62667.61 Da        Isoelectric Point: 5.2758

>NTDB_id=660773 OG295_RS23450 WP_371678643.1 5236608..5238341(-) (rcrP) [Streptomyces sp. NBC_01276]
MLIRLLRTHLGPYRKPITVLVLLQLLQTSASLYLPTLNADIIDNGVVSGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAALGRDVRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLTLMTFTLMVSAPIMCVGGIAMALSLDVKLSGV
LLAVVPVLGLAVGAIVFRTRPLFRQMQDRLDTVNRVLREQITGNRVIRAFVRDGYEEERFRTANSDLTGVSLASGKLLAL
MFPTVIVVVNISSVAVIWFGAMRVDSNGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PAEPVRKLLRRGQLELRGADFRYPGAEAPVLRGVDLVARPGEITAVIGSTGSGKSTLLGLVPRLFDATGGDVLVDGEDVR
RLDPELLARTVGIVPQKPYLFSGTVASNLRYGRPDASDEELWHALEVAQAREFVSELQGGLDAPITQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRSALARETEEATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=660773 OG295_RS23450 WP_371678643.1 5236608..5238341(-) (rcrP) [Streptomyces sp. NBC_01276]
GTGCTCATACGACTTTTGCGGACCCACCTCGGTCCGTACCGGAAACCGATCACCGTACTGGTGCTGCTGCAGCTGCTGCA
GACCAGTGCGAGCCTCTACCTGCCCACCCTCAACGCGGACATCATCGACAACGGTGTCGTCAGCGGCGACACCGGCTACA
TCCTGCGCTTCGGCGCGCTGATGCTCGGCGTCTCCCTCGTCCAGCTCGTGTGCAACGTCGGCGCCGTCTACTACGGCGCC
CGGACCGCGGCCGCACTCGGCCGGGACGTCCGCGCCGCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCCCGCGAACTGGG
CCAGTTCGGCGCACCCTCGCTGATCACCCGGACGACGAACGACGTCCAGCAGGTCCAGATGCTGACCCTGATGACCTTCA
CCCTGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCCCTCGACGTGAAGCTGTCGGGCGTG
CTCCTCGCGGTGGTGCCCGTGCTCGGTCTCGCGGTCGGTGCGATCGTCTTCAGGACGCGGCCGCTGTTCCGCCAGATGCA
GGACCGCCTCGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCGTTCGTCCGCGACG
GCTACGAGGAGGAGCGGTTCCGCACCGCGAACTCCGACCTGACCGGCGTCTCGCTCGCCTCGGGCAAGCTGCTGGCGCTG
ATGTTCCCGACCGTCATCGTCGTCGTGAACATCTCCAGCGTGGCCGTCATCTGGTTCGGCGCCATGCGCGTGGACAGCAA
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTGGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTCCCG
CCGGCCGAGCCGGTCCGCAAGCTCCTGCGGCGCGGGCAGCTGGAACTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCGCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGCCCCGGCGAGATCACCGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTCGGCCTGGTCCCCCGGCTCTTCGACGCGACCGGCGGCGACGTGCTGGTCGACGGGGAGGACGTGCGC
CGGCTCGACCCGGAGCTGCTGGCCAGGACGGTCGGCATCGTCCCGCAGAAGCCGTACCTGTTCTCCGGAACGGTCGCCTC
CAACCTCCGCTACGGGCGCCCGGACGCCAGCGACGAAGAGCTGTGGCACGCCCTGGAGGTGGCCCAGGCCAGGGAGTTCG
TCTCCGAGCTGCAGGGCGGGCTCGACGCGCCCATCACCCAGGGCGGAACGAACGTCTCCGGCGGCCAGCGCCAGCGTCTG
GCGATCGCCCGCACCCTGGTGCAGCGGCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTGGACTACGCGACGGA
CGCGGCGCTCCGCTCGGCGCTCGCCCGCGAGACCGAGGAGGCGACGGTGGTCATCGTGGCGCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTCCTCGACGAGGGCCAGGTGGTCGGCGAGGGCCGCCACCACGAGCTGATGGCCGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.787

97.574

0.388