Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG723_RS13530 Genome accession   NZ_CP108439
Coordinates   2894109..2895254 (-) Length   381 a.a.
NCBI ID   WP_327283317.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01278     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2889109..2900254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG723_RS13520 (OG723_13545) rcrP 2890406..2892139 (+) 1734 WP_327283315.1 ABC transporter ATP-binding protein Regulator
  OG723_RS13525 (OG723_13550) rcrQ 2892136..2894058 (+) 1923 WP_329313469.1 ABC transporter ATP-binding protein Regulator
  OG723_RS13530 (OG723_13555) rpoS 2894109..2895254 (-) 1146 WP_327283317.1 RNA polymerase sigma factor Regulator
  OG723_RS13535 (OG723_13560) - 2895459..2897540 (-) 2082 WP_329313471.1 molybdopterin oxidoreductase family protein -
  OG723_RS13540 (OG723_13565) - 2897587..2897739 (-) 153 WP_327283319.1 hypothetical protein -
  OG723_RS13545 (OG723_13575) - 2898135..2898812 (-) 678 WP_327283320.1 ElyC/SanA/YdcF family protein -
  OG723_RS13550 (OG723_13580) - 2899143..2899922 (+) 780 WP_327283321.1 sirohydrochlorin chelatase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 42546.62 Da        Isoelectric Point: 4.8294

>NTDB_id=660656 OG723_RS13530 WP_327283317.1 2894109..2895254(-) (rpoS) [Streptomyces sp. NBC_01278]
MSYSTLRCGAPVLGALEVAPVQTQILTVNVSPPVHDAEATAGEEPEVDAVDDEPEEPEVLELIEPAPEPRRRADSGGAGP
SADLFRQYLREIGRIPLLSAAEEVELARRVEAGLFAEEKLGGSPDLDLRLALDLDKLVVMGRMAKRRLIESNLRLVVSVA
KRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRML
QERGYEPTAEEVAVHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPMESAAFFLLREHLEAVLSTL
GERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=660656 OG723_RS13530 WP_327283317.1 2894109..2895254(-) (rpoS) [Streptomyces sp. NBC_01278]
GTGTCGTACTCCACACTGAGGTGCGGTGCCCCCGTCCTCGGAGCCCTGGAGGTCGCCCCCGTGCAGACCCAGATCCTGAC
CGTCAACGTGAGCCCGCCCGTGCACGACGCCGAGGCCACTGCGGGTGAAGAGCCCGAGGTCGACGCCGTGGACGACGAGC
CCGAAGAGCCCGAGGTGCTGGAGCTGATCGAGCCGGCGCCCGAGCCGCGCCGGCGCGCGGACAGCGGCGGAGCGGGCCCT
TCCGCCGACCTGTTCCGGCAGTACCTGCGCGAGATAGGCAGGATCCCGCTGCTCTCCGCCGCCGAGGAGGTCGAGCTCGC
GCGCCGCGTCGAAGCCGGCCTGTTCGCCGAGGAGAAGCTGGGCGGCAGTCCCGACCTCGATCTGCGGCTCGCCCTCGACC
TCGACAAGCTCGTCGTCATGGGGCGGATGGCCAAGAGGCGCCTCATCGAGTCCAACCTGCGGCTCGTCGTCTCCGTCGCC
AAGCGCTACGTGGGCCGCGGGCTGACCATGCTCGACCTCGTGCAGGAGGGGAACCTCGGGCTCATCCGGGCCGTTGAGAA
GTTCGACTACGCCCGCGGGTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGCCATGTCGCGGGCCCTCGCCG
ACCAGGCCCGCACCATCCGCGTGCCCGTCCATGTCGTCGAGCTGATCAACCGCGTCGTGCGCGTCCAGCGCCGCATGCTC
CAGGAACGCGGGTACGAACCCACCGCCGAAGAGGTTGCCGTTCATCTGGAGCTGACGCCCGAGCGCGTCCTGGAGGTGCT
GCGCCTCGCCCAGGAGCCGGTCTCGCTCCACGCGCCCGTCGGTGAGGAGGACGACGTCGCCCTCGGCGACCTGATCGAGG
ACGGGGACGCCGCCTCGCCCATGGAGTCCGCCGCGTTCTTCCTGCTCCGCGAACACCTGGAAGCCGTCCTGTCGACCCTC
GGCGAGCGCGAGCGCAAGGTCGTCCAGCTGCGCTACGGCCTGGCCGACGGCAGGCCCCGCACGCTGGAGGAGATCGGGCG
GATCTTCGGCGTGACGCGCGAGCGGATCCGCCAGATCGAGTCCAAGACGCTCAACAAGCTGCGTGACCACGCCTTCGCCG
ACCAGCTCCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(83-116)

Sigma-70, region 4 (Sigma70_r4)

(316-368)

Sigma-70 region 3 (Sigma70_r3)

(227-303)

Sigma-70 region 2 (Sigma70_r2)

(148-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

42.593

85.039

0.362