Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG723_RS13525 Genome accession   NZ_CP108439
Coordinates   2892136..2894058 (+) Length   640 a.a.
NCBI ID   WP_329313469.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01278     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2887136..2899058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG723_RS13490 (OG723_13515) - 2887165..2887398 (-) 234 WP_329313467.1 type II toxin-antitoxin system VapB family antitoxin -
  OG723_RS13510 (OG723_13535) - 2888405..2888707 (+) 303 WP_327283313.1 YtxH domain-containing protein -
  OG723_RS13515 (OG723_13540) - 2888781..2890235 (+) 1455 WP_327283314.1 FGGY family carbohydrate kinase -
  OG723_RS13520 (OG723_13545) rcrP 2890406..2892139 (+) 1734 WP_327283315.1 ABC transporter ATP-binding protein Regulator
  OG723_RS13525 (OG723_13550) rcrQ 2892136..2894058 (+) 1923 WP_329313469.1 ABC transporter ATP-binding protein Regulator
  OG723_RS13530 (OG723_13555) rpoS 2894109..2895254 (-) 1146 WP_327283317.1 RNA polymerase sigma factor Regulator
  OG723_RS13535 (OG723_13560) - 2895459..2897540 (-) 2082 WP_329313471.1 molybdopterin oxidoreductase family protein -
  OG723_RS13540 (OG723_13565) - 2897587..2897739 (-) 153 WP_327283319.1 hypothetical protein -
  OG723_RS13545 (OG723_13575) - 2898135..2898812 (-) 678 WP_327283320.1 ElyC/SanA/YdcF family protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68964.44 Da        Isoelectric Point: 5.5346

>NTDB_id=660655 OG723_RS13525 WP_329313469.1 2892136..2894058(+) (rcrQ) [Streptomyces sp. NBC_01278]
MSGPGGRMMMGPAERSLDFKGSGKRLLSQIAHDRVKLWGMVAAAVGSVACSVVGPKILGQATDLVFAGIVGRQMPAGITK
QQSLDGLRAKGQGGMADMLSGTDFTPGEGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHIMNGTVYRMREELQAKLS
RLPLSYFDRHKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALVTIPVSVFVAAKIGKKS
QPQFVAQWKSTGALNAHIEEMYSGHTLVKVFGRQKESAAIFAEHNEALYRASFKAQLVSGIMQPVMFFISNINYVLVAVV
GGLRVASGNLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAQEQEPDAEVPERPEQVRGQVTLDKV
AFRYEPDKPLIENLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRGSIGMVLQDTWL
FGGTIAENIAYGAAREVTRTEIEEAARAAHADRFVRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLEAEGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=660655 OG723_RS13525 WP_329313469.1 2892136..2894058(+) (rcrQ) [Streptomyces sp. NBC_01278]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCGAGCGGTCCCTGGATTTCAAGGGCTCGGGCAAACGGCTGCT
GAGCCAGATCGCGCACGACCGGGTCAAGCTGTGGGGCATGGTCGCCGCCGCCGTCGGCAGCGTCGCCTGTTCGGTCGTCG
GCCCGAAGATCCTGGGCCAGGCCACCGACCTGGTGTTCGCGGGGATCGTCGGCCGTCAGATGCCGGCCGGGATCACCAAG
CAGCAGTCGCTGGACGGGCTGCGCGCCAAGGGCCAGGGCGGGATGGCGGACATGCTGTCCGGCACCGACTTCACCCCCGG
CGAGGGCATCGACTTCGGTGCCGTCGGCGTCGTGGCGATCTGGGCGCTGGTGGTGTTCACCCTCGCCGGCCTGTTGATGC
TGGTCGCGACGCGGCTGTCGAACCACATCATGAACGGCACCGTGTACCGGATGCGCGAGGAGCTCCAGGCCAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCGGCACAAGCGCGGCGAAGTGCTCAGCCGGGCCACCAACGACATCGACAACATCGG
GCAGACGCTCCAGCAGACGATGGGCCAACTGCTCAACTCGCTGCTGACGATCGTCGGCGTGCTGGCGATGATGTTCTGGA
TCTCCCCGCTGCTGGCGCTGGTCGCGCTGGTGACGATCCCGGTGTCGGTCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGTCGACGGGCGCGCTCAACGCGCACATCGAGGAGATGTACTCGGGCCACACGCT
GGTCAAGGTCTTCGGCCGTCAGAAGGAGTCCGCGGCCATCTTCGCCGAGCACAACGAGGCGCTGTACCGGGCCTCGTTCA
AGGCGCAGCTGGTCAGCGGGATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGGTGGCGGTCGTC
GGCGGTCTGCGGGTGGCCTCGGGCAACCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTCGAT
GCCGCTGACGCAGGTCGCGTCGATGGCGAACCTCGTACAGTCCGGTGTCGCCTCGGCGGAGCGGGTGTACGAGCTGCTCG
ACGCGCAGGAGCAGGAGCCGGACGCGGAGGTCCCGGAGCGGCCGGAGCAGGTCCGCGGCCAGGTCACGCTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTCATCGAGAACCTGTCGCTGACCGTCGAGCCCGGCCACACGGTCGCGATCGT
CGGCCCGACCGGCGCGGGCAAGACCACCCTCGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCGAGATCGCCC
TCGACGGGGTGGACATCGCCAAGATGACCCGCGAGGAACTGCGCGGCAGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGGACCATCGCGGAGAACATCGCCTACGGTGCGGCCCGCGAGGTCACCCGCACCGAGATCGAGGAGGCGGCGCG
GGCCGCCCACGCGGACCGGTTCGTCCGCACCCTGCCCGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATTGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGATGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTGGAGCAGGGCACCC
ACGAGGAGCTGCTGGAGGCGGAGGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(56-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.129

96.563

0.387