Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG723_RS13520 Genome accession   NZ_CP108439
Coordinates   2890406..2892139 (+) Length   577 a.a.
NCBI ID   WP_327283315.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01278     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2885406..2897139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG723_RS13485 (OG723_13510) - 2886761..2887168 (-) 408 WP_329313465.1 PIN domain nuclease -
  OG723_RS13490 (OG723_13515) - 2887165..2887398 (-) 234 WP_329313467.1 type II toxin-antitoxin system VapB family antitoxin -
  OG723_RS13510 (OG723_13535) - 2888405..2888707 (+) 303 WP_327283313.1 YtxH domain-containing protein -
  OG723_RS13515 (OG723_13540) - 2888781..2890235 (+) 1455 WP_327283314.1 FGGY family carbohydrate kinase -
  OG723_RS13520 (OG723_13545) rcrP 2890406..2892139 (+) 1734 WP_327283315.1 ABC transporter ATP-binding protein Regulator
  OG723_RS13525 (OG723_13550) rcrQ 2892136..2894058 (+) 1923 WP_329313469.1 ABC transporter ATP-binding protein Regulator
  OG723_RS13530 (OG723_13555) rpoS 2894109..2895254 (-) 1146 WP_327283317.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62782.80 Da        Isoelectric Point: 5.0792

>NTDB_id=660654 OG723_RS13520 WP_327283315.1 2890406..2892139(+) (rcrP) [Streptomyces sp. NBC_01278]
MLIRLLRTHLSPYRKPIALLVLLQLLQTSASLYLPTLNADIIDNGVVSGDTGYILRSGALMLGVSLVQLGCNCGAVYFGA
RTAAAVGRDVRASVFDRVQSFSARELGQFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCIGGIAMALSLDVKLSGI
LLAVVPILGLSVGAIVFRTRPLFRKMQVRLDTVNRVLREQITGNRVIRAFIRDEYEKDRFREANADLTGVSLAAGRLLAL
MFPTVIVVVNISSVAVIWFGAMRIDSGEMEIGQLTAFLAYLLQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTESSVVP
PVEPVRELVRRGQLELRAADFRYPGAEVPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGDVLVDGEDVR
RLDPELLARTVGMVPQKPYLFSGTVASNLRYGRPDATDEELWHALDVAQAKDFVSELEGGLNAAITQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALTRETEEATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=660654 OG723_RS13520 WP_327283315.1 2890406..2892139(+) (rcrP) [Streptomyces sp. NBC_01278]
GTGCTCATACGACTTCTGCGGACCCATCTGAGTCCGTACCGGAAACCGATCGCCCTACTGGTCCTGCTGCAACTGCTGCA
GACCAGCGCAAGCCTCTACCTCCCCACGCTGAACGCGGACATCATCGACAACGGTGTCGTCAGCGGAGACACGGGCTACA
TCCTGCGCTCCGGCGCACTGATGCTCGGCGTCTCCCTCGTCCAGTTGGGGTGCAACTGCGGCGCCGTCTACTTCGGCGCC
CGTACCGCGGCCGCCGTCGGCCGCGACGTCCGCGCGTCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCCCGCGAGCTCGG
CCAGTTCGGCGCGCCGTCACTGATCACCCGTACGACGAACGACGTGCAGCAGATCCAGATGCTGGTGCTGATGACCTTCA
CCCTGATGGTCTCGGCGCCGATCATGTGCATCGGCGGCATCGCCATGGCGCTCTCGCTCGACGTGAAGCTGTCGGGCATC
CTGCTGGCCGTGGTCCCCATCCTCGGCCTGTCGGTCGGCGCGATCGTCTTCCGGACCCGGCCGCTGTTCCGGAAGATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCATCCGCGACG
AGTACGAGAAGGATCGGTTCCGCGAGGCCAACGCCGACCTGACCGGGGTCTCCCTCGCGGCCGGCCGGCTGCTCGCGCTG
ATGTTCCCGACGGTGATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCATCGACAGCGG
CGAGATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGCTGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTTCCGCGCGCCGAGGTCTGTGCCGAGCGCGTCCAGGAGGTCCTCGACACCGAGTCCAGCGTCGTCCCG
CCCGTCGAGCCGGTGCGCGAGCTCGTGCGGCGCGGCCAGCTGGAGCTGCGCGCCGCCGACTTCCGCTACCCGGGCGCCGA
GGTCCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGTCCCGGCGAGACCACCGCGGTCATCGGCTCCACCGGCAGCGGGA
AGTCCACGCTGCTGGGCCTGGTCCCGCGGCTGTTCGACGCGACCGGCGGCGATGTGCTGGTCGACGGAGAGGACGTACGC
CGTCTCGATCCGGAACTGCTGGCCAGGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTCTTCTCCGGAACCGTCGCCTC
CAACCTGCGGTACGGACGCCCCGACGCCACCGACGAAGAGCTGTGGCACGCGCTGGACGTGGCGCAGGCCAAGGACTTCG
TGTCCGAGCTGGAGGGCGGTCTGAACGCGGCGATCACCCAGGGCGGAACGAACGTCTCCGGCGGCCAGCGCCAGCGCCTG
GCCATCGCGCGCACGCTGGTGCAGCGCCCGGAGATCTACCTGTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCACGCGCGAGACGGAGGAGGCGACGGTCGTCATCGTCGCCCAGCGGGTGTCCACGATCC
GCGACGCCGACCGGATCATCGTGCTGGACGAGGGCCAGGTCGTGGGCGAGGGACGCCACCACGAGCTGATGGCCGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.254

97.574

0.383