Detailed information NTG0660627

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MLC69_RS04165
• Genome accession: NZ_CP092830
• Coordinates: 919523..920389 (-)
• Length: 288 a.a.
• NCBI ID: WP_078046825.1
• Uniprot ID: -
• Organism: Pseudomonas azotoformans strain ZY-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 914523..925389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MLC69_RS04125 (MLC69_04125)	-	914944..916242 (-)	1299	WP_078046821.1	NAD(P)/FAD-dependent oxidoreductase	-
MLC69_RS04130 (MLC69_04130)	-	916303..916476 (-)	174	WP_016976295.1	DUF3094 family protein	-
MLC69_RS04135 (MLC69_04135)	-	916531..917160 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
MLC69_RS04140 (MLC69_04140)	-	917264..917731 (+)	468	WP_078046822.1	FAD/FMN-containing dehydrogenase	-
MLC69_RS04145 (MLC69_04145)	-	917728..918417 (+)	690	WP_078046823.1	energy-coupling factor ABC transporter permease	-
MLC69_RS04150 (MLC69_04150)	-	918494..918709 (+)	216	WP_003171680.1	hypothetical protein	-
MLC69_RS04155 (MLC69_04155)	yacG	918706..918906 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
MLC69_RS04160 (MLC69_04160)	coaE	918903..919526 (-)	624	WP_078046824.1	dephospho-CoA kinase	-
MLC69_RS04165 (MLC69_04165)	pilD	919523..920389 (-)	867	WP_078046825.1	A24 family peptidase	Machinery gene
MLC69_RS04170 (MLC69_04170)	pilC	920386..921594 (-)	1209	WP_078046826.1	type II secretion system F family protein	Machinery gene
MLC69_RS04175 (MLC69_04175)	-	921797..922210 (+)	414	WP_078050867.1	pilin	-
MLC69_RS04180 (MLC69_04180)	-	922246..923646 (+)	1401	WP_078046827.1	O-antigen ligase family protein	-
MLC69_RS04190 (MLC69_04190)	-	923928..924233 (+)	306	WP_078046828.1	DUF6388 family protein	-
MLC69_RS04195 (MLC69_04195)	nadC	924277..925125 (-)	849	WP_078046829.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31783.80 Da
• Isoelectric Point: 7.6849

>NTDB_id=660627 MLC69_RS04165 WP_078046825.1 919523..920389(-) (pilD) [Pseudomonas azotoformans strain ZY-1]
MSQLLAVHPWAFVALASVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPASPTYTLMQPNSCCPQCDHPIRPW
ENIPLLSYLFLRGRCAHCQGAISARYPLTELTCALISAWVAWHFGYGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIINGFGLLTTLSDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLISSLVGVF
VGLILMRLRKSQASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=660627 MLC69_RS04165 WP_078046825.1 919523..920389(-) (pilD) [Pseudomonas azotoformans strain ZY-1]
TTGAGCCAGCTATTGGCTGTACACCCCTGGGCTTTTGTTGCACTGGCGTCGGTGCTGGGGCTGATCGTCGGCAGTTTTCT
CAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCGAACGGGAATGGCGCGCCCAGGCCCACGAAGTGCTCGGCTTGCCCG
CTGAGCCTGCCAGCCCGACCTACACCCTGATGCAGCCTAATTCCTGCTGCCCACAGTGTGACCATCCGATACGCCCTTGG
GAAAATATCCCACTGCTCAGCTACCTGTTTCTGCGAGGTCGCTGCGCCCATTGCCAGGGTGCGATCAGCGCCCGTTATCC
GCTCACGGAACTGACGTGCGCGCTGATCTCGGCCTGGGTGGCCTGGCATTTCGGCTATGGCTGGCAGGCGGGCGCAGTGC
TGGTATTGAGCTGGGGCTTGTTGGCGATGAGCCTGATCGACGCCGACCACCAACTGTTGCCGGATGTGCTGGTGATGCCG
CTGTTATGGCTGGGGCTGATCATCAACGGCTTCGGCCTGCTGACGACACTGTCGGATGCCCTGTGGGGTGCGGTGATCGG
CTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACTGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGCTGGCCTTGCTCGGCGCCTGGGGTGGCTGGCAAATCCTGCCAATGACGCTGTTGATTTCGTCGCTGGTGGGGGTATTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGTCCCAAGCGTCGGCACCGATGCCGTTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.577	98.611	0.538
pilD	Vibrio campbellii strain DS40M4	50.877	98.958	0.503
pilD	Neisseria gonorrhoeae MS11	51.111	93.75	0.479
pilD	Acinetobacter baumannii D1279779	49.817	94.792	0.472
pilD	Acinetobacter nosocomialis M2	49.817	94.792	0.472