Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MK860_RS19405 Genome accession   NZ_CP092829
Coordinates   3807385..3807930 (-) Length   181 a.a.
NCBI ID   WP_034660649.1    Uniprot ID   -
Organism   Bacillus pumilus strain MS32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3802385..3812930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS19380 (MK860_19315) - 3802652..3803260 (-) 609 WP_044139045.1 alpha/beta hydrolase -
  MK860_RS19385 (MK860_19320) - 3803257..3804228 (-) 972 WP_221450762.1 ring-cleaving dioxygenase -
  MK860_RS19390 (MK860_19325) - 3804420..3805937 (-) 1518 WP_113767982.1 ABC transporter permease/substrate-binding protein -
  MK860_RS19395 (MK860_19330) - 3805930..3806895 (-) 966 WP_044139042.1 ABC transporter ATP-binding protein -
  MK860_RS19400 (MK860_19335) rpsR 3807105..3807344 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  MK860_RS19405 (MK860_19340) ssbA 3807385..3807930 (-) 546 WP_034660649.1 single-stranded DNA-binding protein SsbA Machinery gene
  MK860_RS19410 (MK860_19345) rpsF 3807967..3808254 (-) 288 WP_044139040.1 30S ribosomal protein S6 -
  MK860_RS19415 (MK860_19350) ychF 3808363..3809463 (-) 1101 WP_044139039.1 redox-regulated ATPase YchF -
  MK860_RS19420 (MK860_19355) - 3809680..3809886 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  MK860_RS19425 (MK860_19360) - 3810172..3811491 (+) 1320 WP_113767983.1 hydrolase -
  MK860_RS19430 (MK860_19365) - 3811507..3811917 (+) 411 WP_044139037.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19733.28 Da        Isoelectric Point: 4.6109

>NTDB_id=660625 MK860_RS19405 WP_034660649.1 3807385..3807930(-) (ssbA) [Bacillus pumilus strain MS32]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPNQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=660625 MK860_RS19405 WP_034660649.1 3807385..3807930(-) (ssbA) [Bacillus pumilus strain MS32]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAATCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376