Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MK860_RS15125 Genome accession   NZ_CP092829
Coordinates   2946696..2947337 (-) Length   213 a.a.
NCBI ID   WP_058013793.1    Uniprot ID   A0A2G8IV23
Organism   Bacillus pumilus strain MS32     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2941696..2952337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS15090 (MK860_15030) - 2942828..2943259 (+) 432 WP_034317176.1 Na(+)/H(+) antiporter subunit B -
  MK860_RS15095 (MK860_15035) - 2943259..2943600 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  MK860_RS15100 (MK860_15040) - 2943593..2945071 (+) 1479 WP_106066316.1 Na+/H+ antiporter subunit D -
  MK860_RS15105 (MK860_15045) - 2945078..2945557 (+) 480 WP_003213059.1 Na+/H+ antiporter subunit E -
  MK860_RS15110 (MK860_15050) - 2945557..2945838 (+) 282 WP_113768029.1 Na(+)/H(+) antiporter subunit F1 -
  MK860_RS15115 (MK860_15055) mnhG 2945822..2946196 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  MK860_RS15120 (MK860_15060) - 2946283..2946672 (-) 390 WP_106066313.1 hotdog fold thioesterase -
  MK860_RS15125 (MK860_15065) comA 2946696..2947337 (-) 642 WP_058013793.1 response regulator transcription factor Regulator
  MK860_RS15130 (MK860_15070) comP 2947418..2949703 (-) 2286 WP_278176354.1 ATP-binding protein Regulator
  MK860_RS15135 (MK860_15075) comX 2949710..2949889 (-) 180 WP_034620107.1 competence pheromone ComX -
  MK860_RS15140 (MK860_15080) - 2949867..2950790 (-) 924 WP_278176358.1 polyprenyl synthetase family protein -
  MK860_RS15145 (MK860_15085) degQ 2950942..2951082 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  MK860_RS15150 (MK860_15090) - 2951588..2951941 (+) 354 WP_185106862.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24154.55 Da        Isoelectric Point: 4.5688

>NTDB_id=660611 MK860_RS15125 WP_058013793.1 2946696..2947337(-) (comA) [Bacillus pumilus strain MS32]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=660611 MK860_RS15125 WP_058013793.1 2946696..2947337(-) (comA) [Bacillus pumilus strain MS32]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGATATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTAGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IV23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718