Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MKK04_RS07235 Genome accession   NZ_CP092827
Coordinates   1567076..1569289 (+) Length   737 a.a.
NCBI ID   WP_241106411.1    Uniprot ID   -
Organism   Pseudomonas sp. LS.1a     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1562076..1574289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKK04_RS07210 (MKK04_07210) - 1562262..1563752 (-) 1491 WP_241106410.1 hypothetical protein -
  MKK04_RS07215 (MKK04_07215) - 1563940..1564563 (+) 624 WP_207832223.1 glutathione S-transferase -
  MKK04_RS07220 (MKK04_07220) - 1564709..1565641 (+) 933 WP_207832221.1 ABC transporter ATP-binding protein -
  MKK04_RS07225 (MKK04_07225) - 1565638..1566417 (+) 780 WP_085625335.1 ABC transporter permease -
  MKK04_RS07230 (MKK04_07230) - 1566421..1566933 (-) 513 Protein_1400 DUF2062 domain-containing protein -
  MKK04_RS07235 (MKK04_07235) comA 1567076..1569289 (+) 2214 WP_241106411.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MKK04_RS07240 (MKK04_07240) exbB 1569473..1570108 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MKK04_RS07245 (MKK04_07245) - 1570105..1570539 (+) 435 WP_046617071.1 biopolymer transporter ExbD -
  MKK04_RS07250 (MKK04_07250) lpxK 1570539..1571540 (+) 1002 WP_207832215.1 tetraacyldisaccharide 4'-kinase -
  MKK04_RS07255 (MKK04_07255) - 1571585..1571770 (+) 186 WP_011532874.1 Trm112 family protein -
  MKK04_RS07260 (MKK04_07260) kdsB 1571767..1572531 (+) 765 WP_207832213.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MKK04_RS07265 (MKK04_07265) - 1572531..1572995 (+) 465 WP_063911712.1 low molecular weight protein-tyrosine-phosphatase -
  MKK04_RS07270 (MKK04_07270) murB 1572992..1574011 (+) 1020 WP_241106412.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79769.72 Da        Isoelectric Point: 10.4126

>NTDB_id=660526 MKK04_RS07235 WP_241106411.1 1567076..1569289(+) (comA) [Pseudomonas sp. LS.1a]
MRTGMLALALGLLCLGFLPALPSVGWLISLAVCAAVSLFTRVWPLGCLLLGLCWACWSAQQAIDNRLAAGLDGRTLWLEG
RVVGLPTSTAQGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDTLRQRLLAVEANDRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACSLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRYRHLGATLPLLLALIAVLLVEPL
AALLPGFWLSFTAVATLVYCFSARLGGWRPWQAWTRAQWVMAIGLLPVLLATGLPVSLSAPLANLVAVPWISLAVLPLAL
LGTLLLPLGGLGEAVLWLAGGLLDLLFQLLALVAQQRPAWVPPALPLWAWLLVCLGALLVLMPHGVPLRGLGGVMLLALW
VPRETVPFGQVEVWQLDVGQGLAVLLRTRHRNMLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMLVSHAHADHAGGAG
AIQRGLPVNRVVGGEVLEDIQLQPCASGEQWTWDGVRFSLWRWADGRSSNDRSCVLLVEARGERLLLAGDMEAGAERAWL
AAHEVPRIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGMVIHDTAEQGALRLVLGRQG
EVEGVREQRRFWRVRAP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=660526 MKK04_RS07235 WP_241106411.1 1567076..1569289(+) (comA) [Pseudomonas sp. LS.1a]
ATGCGCACAGGGATGTTGGCGCTCGCGCTCGGGTTATTGTGCCTGGGCTTTCTCCCCGCATTGCCATCGGTCGGATGGCT
GATATCGCTGGCTGTCTGCGCTGCCGTCAGCCTGTTTACCCGCGTTTGGCCGTTGGGCTGCTTGCTGCTGGGCTTGTGTT
GGGCTTGCTGGTCTGCCCAGCAGGCAATTGATAATCGCCTGGCTGCTGGCCTGGATGGTCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCTTGCCGACCAGCACTGCGCAAGGCGTGCGCTTCGAGTTGGAGGCGCCACGTTCACGGCGGGCCGAACT
GCCGCAACGTCTGCAACTGAGCTGGTTTGACGGGCCACCACTGCGGGCGGGCGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGGCCGGATCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCCACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGCCGGTGGTTGGCGCGACACGCTGCGCCAGCGTCTGCTGGCCGTCGA
GGCCAATGACCGGCAGGCAGCGTTGGTGGCACTGGTGCTTGGTGACGGGGCGGGGTTGGCGCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACTTGCTGGTGATTTCTGGCCAGCACATCGGCCTGGTTGCCGGCTTGCTGTATGGCCTG
GTCGCCGGGCTGGCGCGCTGGGGCCTGTGGCCGGCACGGTTGCCGTGGTTACCTTGGGCTTGCAGTCTGGCCATGGCCGC
AGCGTTGGCCTACGGCTGGCTGGCCGGTGCAGGCGTGCCGGTGCAGCGGGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTATCGCCACCTGGGTGCAACACTGCCGCTGTTGCTGGCGCTGATCGCGGTGCTGCTGGTCGAACCGTTG
GCGGCGCTGTTGCCCGGGTTCTGGTTGTCGTTTACTGCAGTGGCCACGCTTGTCTATTGCTTCAGCGCCCGCTTGGGCGG
CTGGCGGCCATGGCAGGCCTGGACGCGGGCGCAATGGGTGATGGCCATCGGTTTGCTGCCTGTGCTGTTGGCCACGGGCT
TGCCAGTGAGCCTGAGTGCGCCGCTGGCCAACCTCGTGGCGGTGCCGTGGATCAGCCTGGCGGTGTTGCCTTTGGCGTTG
CTGGGTACGTTACTGCTGCCGTTGGGTGGGTTAGGGGAGGCGGTGCTCTGGTTGGCAGGTGGCCTGCTGGATCTACTGTT
CCAGCTGCTGGCGCTGGTGGCGCAGCAACGGCCTGCATGGGTGCCGCCGGCCTTGCCATTGTGGGCCTGGCTGCTGGTCT
GCCTGGGTGCGCTGCTGGTTTTGATGCCCCATGGCGTACCCCTGCGCGGGTTGGGGGGCGTGATGCTACTGGCGCTGTGG
GTGCCCCGGGAGACGGTACCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAAGGCTTGGCGGTGCTGTTGCG
TACCCGCCATCGCAACATGCTGTACGACGCCGGGCCGGCCAGAGGCGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGCTGGGCGTGGGTAGCCTGGATTTGATGCTGGTCAGTCATGCCCATGCCGATCATGCCGGTGGTGCTGGC
GCAATCCAGCGTGGTCTGCCGGTCAACCGGGTGGTCGGTGGCGAAGTGCTGGAAGACATCCAACTGCAACCTTGTGCCAG
TGGCGAGCAATGGACGTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCTGATGGGCGCAGCAGCAATGACCGCTCTT
GTGTGCTGTTGGTCGAGGCGCGGGGGGAGCGGTTGTTGCTGGCGGGGGATATGGAAGCCGGTGCCGAGCGGGCCTGGCTG
GCGGCCCACGAAGTACCGCGTATCGACTGGTTGCAGTCGCCGCACCATGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCAT
CCGCGCCACGGCACCGCGCGGGGTGCTGATTTCGCGGGGGCGCAACAATAGCTTCGGGCACCCGCATGCGCAGGTGGTCG
AGCGTTATCGGCGGCATGGGATGGTGATACATGACACGGCCGAGCAAGGGGCGTTGCGGTTGGTGCTGGGGAGGCAGGGG
GAAGTTGAGGGGGTGAGGGAGCAGCGGCGGTTTTGGCGGGTTCGGGCACCGTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(16-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.472

97.693

0.571
  comA Ralstonia pseudosolanacearum GMI1000

35.271

100

0.37