Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MKK04_RS07240 Genome accession   NZ_CP092827
Coordinates   1569473..1570108 (+) Length   211 a.a.
NCBI ID   WP_003259970.1    Uniprot ID   V9UW47
Organism   Pseudomonas sp. LS.1a     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1564473..1575108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKK04_RS07220 (MKK04_07220) - 1564709..1565641 (+) 933 WP_207832221.1 ABC transporter ATP-binding protein -
  MKK04_RS07225 (MKK04_07225) - 1565638..1566417 (+) 780 WP_085625335.1 ABC transporter permease -
  MKK04_RS07230 (MKK04_07230) - 1566421..1566933 (-) 513 Protein_1400 DUF2062 domain-containing protein -
  MKK04_RS07235 (MKK04_07235) comA 1567076..1569289 (+) 2214 WP_241106411.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MKK04_RS07240 (MKK04_07240) exbB 1569473..1570108 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MKK04_RS07245 (MKK04_07245) - 1570105..1570539 (+) 435 WP_046617071.1 biopolymer transporter ExbD -
  MKK04_RS07250 (MKK04_07250) lpxK 1570539..1571540 (+) 1002 WP_207832215.1 tetraacyldisaccharide 4'-kinase -
  MKK04_RS07255 (MKK04_07255) - 1571585..1571770 (+) 186 WP_011532874.1 Trm112 family protein -
  MKK04_RS07260 (MKK04_07260) kdsB 1571767..1572531 (+) 765 WP_207832213.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MKK04_RS07265 (MKK04_07265) - 1572531..1572995 (+) 465 WP_063911712.1 low molecular weight protein-tyrosine-phosphatase -
  MKK04_RS07270 (MKK04_07270) murB 1572992..1574011 (+) 1020 WP_241106412.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3616

>NTDB_id=660527 MKK04_RS07240 WP_003259970.1 1569473..1570108(+) (exbB) [Pseudomonas sp. LS.1a]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRVSRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=660527 MKK04_RS07240 WP_003259970.1 1569473..1570108(+) (exbB) [Pseudomonas sp. LS.1a]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGTCAGCCGCGTCACCCCGCCGCACCTGCTCGGCCAGGTGTGGATATGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCGCTGCGCGCCGATTCGCCACTGGGCGAAATCCTCGCCGCCGGCCTGGCCAAC
TCACGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTCGAACGCTACAT
CAGCACTCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGTGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9UW47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829