Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG534_RS25210 Genome accession   NZ_CP108423
Coordinates   5590775..5591812 (+) Length   345 a.a.
NCBI ID   WP_326593825.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01294     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5585775..5596812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG534_RS25190 (OG534_25225) - 5585957..5588032 (+) 2076 WP_326590932.1 molybdopterin oxidoreductase family protein -
  OG534_RS25195 (OG534_25230) - 5588033..5589013 (-) 981 WP_326590934.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG534_RS25200 (OG534_25235) - 5589010..5590008 (-) 999 WP_326590935.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG534_RS25205 (OG534_25240) - 5590005..5590586 (-) 582 WP_326590936.1 hypothetical protein -
  OG534_RS25210 (OG534_25245) rpoS 5590775..5591812 (+) 1038 WP_326593825.1 RNA polymerase sigma factor Regulator
  OG534_RS25215 (OG534_25250) rcrQ 5591870..5593792 (-) 1923 WP_326590937.1 ABC transporter ATP-binding protein Regulator
  OG534_RS25220 (OG534_25255) rcrP 5593789..5595522 (-) 1734 WP_326590938.1 ABC transporter ATP-binding protein Regulator
  OG534_RS25225 (OG534_25260) - 5595745..5596110 (+) 366 WP_326590939.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38787.31 Da        Isoelectric Point: 5.2566

>NTDB_id=660343 OG534_RS25210 WP_326593825.1 5590775..5591812(+) (rpoS) [Streptomyces sp. NBC_01294]
MTVNVSESSEAKAVDEEPEVLELIEPVPVQRRRSSSDSGGGAGPSADLFRQYLREIGRIPLLTAAEEVDLARRVEAGLFA
EEKLGSTPDLDSQLALDLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKF
STYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERVLEVLRLAQEPVSL
HAPVGEEDDVALGDLIEDGDATSPVESAAFFLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERI
RQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=660343 OG534_RS25210 WP_326593825.1 5590775..5591812(+) (rpoS) [Streptomyces sp. NBC_01294]
CTGACCGTGAACGTGAGCGAGTCCTCGGAGGCCAAGGCCGTGGACGAAGAGCCCGAGGTACTGGAGCTGATCGAGCCGGT
GCCCGTGCAGCGCAGGCGGAGCAGCAGCGACAGCGGGGGCGGAGCGGGACCTTCCGCGGATCTGTTCCGGCAGTACCTCC
GCGAGATAGGCAGGATCCCGCTGCTCACCGCCGCAGAGGAGGTGGACCTCGCCCGGCGCGTCGAGGCGGGGCTGTTCGCC
GAGGAGAAACTCGGCAGCACACCGGACCTCGACTCCCAGCTCGCCCTCGACCTCGACAAGCTCGTCGTCATGGGGCGGAT
GGCCAAGCGCCGTCTCATCGAGTCGAACCTGCGGCTCGTCGTCTCCGTCGCGAAGCGGTACGTGGGCCGCGGGCTCACCA
TGCTCGACCTCGTGCAGGAGGGCAACCTCGGGCTCATCCGGGCCGTGGAGAAGTTCGACTACGCCCGCGGGTACAAGTTC
TCCACCTACGCCACCTGGTGGATCCGGCAGGCGATGTCCCGGGCCCTCGCCGACCAGGCCCGGACCATCCGCGTACCCGT
CCACGTGGTCGAGCTGATCAACCGCGTCGTCCGCGTCCAGCGCCGCATGCTCCAGGAGCGCGGCTACGAGCCCACCGCCG
AAGAGGTCGCCGTCCACCTGGAGCTGACCCCCGAGCGGGTCCTGGAGGTGCTCCGCCTCGCCCAGGAGCCGGTCTCCCTG
CACGCCCCGGTGGGCGAGGAGGACGACGTCGCGCTCGGCGACCTCATCGAGGACGGTGACGCCACCTCACCCGTGGAGTC
GGCCGCCTTCTTCCTGCTGCGCGAGCACCTGGAAGCCGTGCTGTCGACGCTCGGCGAACGCGAGCGCAAGGTCGTGCAGC
TGCGGTACGGCCTCGCCGACGGGCGGCCGCGCACCCTGGAGGAGATCGGCCGGATCTTCGGCGTGACGCGCGAGCGGATC
CGCCAGATCGAGTCCAAGACCCTCAACAAGCTCCGCGACCACGCCTTCGCCGACCAGCTCCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(191-267)

Sigma-70, region 4 (Sigma70_r4)

(280-332)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(47-80)

Sigma-70 region 2 (Sigma70_r2)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.686

84.928

0.371