Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG534_RS25220 Genome accession   NZ_CP108423
Coordinates   5593789..5595522 (-) Length   577 a.a.
NCBI ID   WP_326590938.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01294     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5588789..5600522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG534_RS25200 (OG534_25235) - 5589010..5590008 (-) 999 WP_326590935.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG534_RS25205 (OG534_25240) - 5590005..5590586 (-) 582 WP_326590936.1 hypothetical protein -
  OG534_RS25210 (OG534_25245) rpoS 5590775..5591812 (+) 1038 WP_326593825.1 RNA polymerase sigma factor Regulator
  OG534_RS25215 (OG534_25250) rcrQ 5591870..5593792 (-) 1923 WP_326590937.1 ABC transporter ATP-binding protein Regulator
  OG534_RS25220 (OG534_25255) rcrP 5593789..5595522 (-) 1734 WP_326590938.1 ABC transporter ATP-binding protein Regulator
  OG534_RS25225 (OG534_25260) - 5595745..5596110 (+) 366 WP_326590939.1 hypothetical protein -
  OG534_RS25230 (OG534_25265) - 5596142..5597590 (-) 1449 WP_326590940.1 FGGY family carbohydrate kinase -
  OG534_RS25235 (OG534_25270) - 5597688..5597990 (-) 303 WP_326590941.1 YtxH domain-containing protein -
  OG534_RS25255 (OG534_25290) - 5598618..5599775 (-) 1158 WP_326590943.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62367.21 Da        Isoelectric Point: 5.0559

>NTDB_id=660345 OG534_RS25220 WP_326590938.1 5593789..5595522(-) (rcrP) [Streptomyces sp. NBC_01294]
MLIRLLRTHLGPYRKPVAVLVLLQLLQTSASLYLPTLNADIIDNGVVTGDTGYILRFGALMLGVSLVQLVCNAGAVYYGA
RTAAAFGRDVRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVRLSGV
LLAVVPVLGISVGAIVFRTRPLFRQMQDRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRDANADLTGISLASGKLLAY
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMAVMMATFMFMIVPRAEVCGERIQEVLDTDSSVVP
PKDPVRELARRGLLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGAVLVDGEDVR
GLDPDLLARTVGMVPQKPYLFSGTVASNLRYGRPDASDEELWQALEVAQAKEFVSALEGGLEAPVTQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVATIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=660345 OG534_RS25220 WP_326590938.1 5593789..5595522(-) (rcrP) [Streptomyces sp. NBC_01294]
GTGCTCATACGACTTCTGCGGACCCATCTGGGGCCGTACCGGAAACCCGTCGCCGTGCTGGTCCTGCTGCAGCTGCTGCA
GACCAGCGCGAGCCTCTACCTGCCCACGCTCAACGCGGACATCATTGACAACGGTGTCGTGACCGGTGACACCGGCTACA
TCCTGCGCTTCGGCGCGCTGATGCTCGGCGTCTCGCTCGTCCAGCTCGTCTGCAACGCCGGCGCGGTCTACTACGGCGCC
CGCACGGCGGCGGCCTTCGGCCGGGACGTCCGCGCCGCCGTCTTCGACCGCGTGCAGAGCTTCTCCGCGCGGGAGCTCGG
CCAGTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACCTTCA
CCCTGATGGTCTCGGCCCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCGCTCGACGTGCGGCTTTCCGGCGTC
CTGCTCGCCGTGGTGCCCGTGCTCGGGATCTCGGTCGGCGCCATCGTCTTCAGGACGCGGCCGCTGTTCCGCCAGATGCA
GGACCGTCTGGACACCGTGAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGTGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGTTTCCGCGACGCCAACGCCGACCTCACCGGCATCTCGCTGGCCTCCGGCAAGCTCCTGGCCTAC
ATGTTCCCCACGGTCATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGTGCGATGCGCGTCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACCGCCTTCCTCGCCTACCTGATGCAGATCGTCATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATTGTGCCGCGCGCCGAGGTCTGCGGGGAGCGCATCCAGGAGGTCCTGGACACCGACTCCAGCGTGGTCCCG
CCCAAGGACCCGGTGCGCGAACTCGCCCGCCGCGGCCTGCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCGGA
GGCCCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGCCCCGGCGAGACCACGGCGGTGATCGGCTCCACCGGAAGCGGCA
AGTCCACGCTGCTCGGCCTGGTTCCGCGCCTGTTCGACGCGACCGGGGGCGCGGTGCTCGTCGACGGGGAGGACGTCCGC
GGGCTCGACCCCGACCTGCTGGCCAGGACGGTCGGCATGGTTCCGCAGAAGCCGTACCTGTTCTCCGGAACCGTCGCTTC
CAACCTGCGCTACGGGCGCCCGGACGCGAGCGACGAAGAGCTGTGGCAGGCCCTGGAGGTGGCCCAGGCCAAGGAGTTCG
TCTCCGCGCTGGAAGGCGGCCTGGAGGCTCCCGTCACACAGGGCGGAACCAATGTCTCCGGCGGCCAGCGCCAGCGTCTG
GCGATCGCCCGCACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGCGAGACGGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCGCCACGATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGCCAGGTGGTGGGCGAGGGGCGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.206

100

0.406