Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG534_RS25215 Genome accession   NZ_CP108423
Coordinates   5591870..5593792 (-) Length   640 a.a.
NCBI ID   WP_326590937.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01294     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5586870..5598792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG534_RS25195 (OG534_25230) - 5588033..5589013 (-) 981 WP_326590934.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG534_RS25200 (OG534_25235) - 5589010..5590008 (-) 999 WP_326590935.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG534_RS25205 (OG534_25240) - 5590005..5590586 (-) 582 WP_326590936.1 hypothetical protein -
  OG534_RS25210 (OG534_25245) rpoS 5590775..5591812 (+) 1038 WP_326593825.1 RNA polymerase sigma factor Regulator
  OG534_RS25215 (OG534_25250) rcrQ 5591870..5593792 (-) 1923 WP_326590937.1 ABC transporter ATP-binding protein Regulator
  OG534_RS25220 (OG534_25255) rcrP 5593789..5595522 (-) 1734 WP_326590938.1 ABC transporter ATP-binding protein Regulator
  OG534_RS25225 (OG534_25260) - 5595745..5596110 (+) 366 WP_326590939.1 hypothetical protein -
  OG534_RS25230 (OG534_25265) - 5596142..5597590 (-) 1449 WP_326590940.1 FGGY family carbohydrate kinase -
  OG534_RS25235 (OG534_25270) - 5597688..5597990 (-) 303 WP_326590941.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68731.14 Da        Isoelectric Point: 5.2845

>NTDB_id=660344 OG534_RS25215 WP_326590937.1 5591870..5593792(-) (rcrQ) [Streptomyces sp. NBC_01294]
MSGPGGRMMMGPATRSMDFKGSGKRLLGQLAHDRARIWGMVAAVVASVGCAVVGPKILGEATDLVFAGIVGREMPAGTTK
QQALDGLRADGHDGMADMLSGTDFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHIMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTILGVLAMMFWISPLLALVALATVPLSVFVAAKIGKKS
QPQFVAQWKTTGALNAHIEEMYSGHNLVKVFGRQKESAALFAEQNEALYRASFKAQLVSGIMQPVMLFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAAEQEPDAEVPERPRELRGQVTFDKV
AFRYEPDKPLIENLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIGLDGVDIAKMTREELRAGIGMVLQDTWL
FGGTIAENIAYGASREVTRAEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLASGGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=660344 OG534_RS25215 WP_326590937.1 5591870..5593792(-) (rcrQ) [Streptomyces sp. NBC_01294]
ATGAGCGGACCCGGAGGACGGATGATGATGGGGCCGGCGACGCGCTCCATGGACTTCAAGGGATCGGGCAAGCGGCTGCT
GGGCCAGCTCGCGCACGACCGGGCCAGGATCTGGGGCATGGTCGCGGCCGTCGTCGCCAGCGTCGGCTGCGCGGTGGTCG
GGCCGAAGATCCTGGGCGAGGCCACCGACCTGGTGTTCGCGGGGATCGTGGGCCGGGAGATGCCCGCAGGGACGACCAAG
CAGCAGGCCCTGGACGGGTTGCGCGCCGACGGCCACGACGGCATGGCGGACATGCTCTCCGGGACCGACTTCACCCCGGG
GCAGGGCATCGACTTCGGCGCCGTCGGGGTGGTGGCGATCTGGGCGCTGGTGGTCTTCACCCTGGCCGGCCTGCTGATGC
TGGTCGCGACCCGGCTGTCGAACCACATCATGAACGGCACCGTCTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCCACGAACGACATCGACAACATCGG
CCAGACGCTGCAGCAGACGATGGGTCAGCTGCTGAACTCGCTGCTGACCATCCTCGGCGTGCTCGCGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGCGACCGTGCCGCTCTCGGTCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGACGACCGGTGCGCTGAACGCCCACATCGAGGAGATGTACTCGGGGCACAACCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCGCTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCGTCCTTCA
AGGCGCAGCTGGTCAGCGGCATCATGCAGCCCGTGATGCTCTTCATCTCGAACATCAACTACGTGCTGATAGCCGTGGTC
GGCGGGCTCCGGGTCGCCTCCGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACGCAGGTGGCGTCGATGGCGAACCTCGTGCAGTCCGGTGTCGCCTCGGCGGAGCGGGTCTACGAGCTGCTGG
ACGCGGCCGAGCAAGAGCCGGACGCCGAGGTTCCGGAGCGGCCGCGGGAGCTGCGCGGCCAGGTGACCTTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCGCTGTCGGTCGAGCCGGGCCACACGGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACGACGCTGGTGAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCGAGATCGGCC
TCGACGGGGTGGACATCGCGAAGATGACGCGCGAGGAACTGCGCGCCGGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACGATCGCCGAGAACATCGCCTACGGTGCCTCGCGCGAAGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
GGCCGCGCACGCGGACCGCTTCATCCGCACGCTGCCGGACGGCTACGACACCGTCCTGGACGACGAGGGCGCGGGGGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTCTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGCTCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCGTCGGGCGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.871

97.188

0.387