Detailed information NTG0660260

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG730_RS28235
• Genome accession: NZ_CP108414
• Coordinates: 6223569..6224699 (+)
• Length: 376 a.a.
• NCBI ID: WP_327306866.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01298
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6218569..6229699

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG730_RS28215 (OG730_28195)	-	6219095..6219916 (+)	822	WP_327306862.1	glucose 1-dehydrogenase	-
OG730_RS28220 (OG730_28200)	-	6220080..6222209 (+)	2130	WP_327306863.1	molybdopterin oxidoreductase family protein	-
OG730_RS28225 (OG730_28205)	-	6222206..6222784 (-)	579	WP_327306864.1	nucleotidyl transferase AbiEii/AbiGii toxin family protein	-
OG730_RS28230 (OG730_28210)	-	6222803..6223408 (-)	606	WP_327306865.1	nucleotidyl transferase AbiEii/AbiGii toxin family protein	-
OG730_RS28235 (OG730_28215)	rpoS	6223569..6224699 (+)	1131	WP_327306866.1	RNA polymerase sigma factor	Regulator
OG730_RS28240 (OG730_28220)	rcrQ	6224765..6226690 (-)	1926	WP_327306867.1	ABC transporter ATP-binding protein	Regulator
OG730_RS28245 (OG730_28225)	rcrP	6226687..6228420 (-)	1734	WP_327306868.1	ABC transporter ATP-binding protein	Regulator
OG730_RS28250 (OG730_28230)	-	6228653..6229018 (+)	366	WP_327306869.1	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41913.83 Da
• Isoelectric Point: 4.7147

>NTDB_id=660260 OG730_RS28235 WP_327306866.1 6223569..6224699(+) (rpoS) [Streptomyces sp. NBC_01298]
MEVAPVQTQSLTVTVSPPAEVPAAEEPEAEAEADAVHEEEAEEAEEAEELGVPELMEKVPPPRKRPAEGSGGAGPSADLF
RQYLREIGRIPLLTAVEEVELARRVEAGLFAEEKLGGGAALDLQLTLDLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVG
RGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGY
EPTAEEVAVHLELTPERVLEVLRLAQEPISLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERER
KVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide

• Length: 1131 bp

>NTDB_id=660260 OG730_RS28235 WP_327306866.1 6223569..6224699(+) (rpoS) [Streptomyces sp. NBC_01298]
GTGGAGGTCGCCCCCGTGCAGACCCAGAGCCTGACCGTCACCGTCAGCCCGCCCGCCGAAGTGCCCGCGGCCGAAGAGCC
CGAGGCCGAGGCCGAGGCCGACGCCGTGCACGAGGAGGAGGCCGAAGAGGCCGAAGAGGCTGAGGAGTTGGGGGTCCCGG
AACTCATGGAGAAGGTGCCCCCGCCGCGCAAGCGCCCGGCGGAAGGCTCCGGCGGAGCGGGACCGTCCGCCGACCTGTTC
CGGCAGTACCTGCGCGAGATAGGCAGGATCCCGCTGCTCACCGCCGTCGAGGAGGTCGAGCTCGCGCGGCGCGTGGAAGC
GGGACTGTTCGCGGAGGAGAAGCTCGGCGGCGGAGCCGCCCTCGACCTGCAGCTCACGCTCGATCTCGACAAGCTCGTCG
TCATGGGCCGCATGGCCAAACGCCGCCTCATCGAGTCGAACCTGCGGCTCGTCGTCTCCGTCGCCAAGCGCTACGTCGGC
CGCGGACTCACCATGCTCGACCTGGTCCAGGAGGGGAACCTCGGACTGATCCGCGCCGTCGAGAAGTTCGACTACGCCCG
CGGCTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGCCAGGCCATGTCCCGCGCCCTCGCCGACCAGGCCCGGACCA
TCCGCGTCCCCGTCCACGTCGTCGAACTGATCAACCGCGTCGTGCGCGTCCAGCGCCGCATGCTCCAGGAGCGGGGGTAC
GAACCCACCGCCGAGGAGGTCGCCGTCCACCTCGAGCTGACCCCCGAGCGGGTGCTGGAAGTCCTGCGTCTCGCCCAGGA
GCCGATCTCGCTGCACGCACCCGTGGGTGAGGAGGACGATGTCGCGCTCGGCGACCTCATCGAGGACGGGGACGCCGCCT
CACCGGTCGAATCGGCCGCGTTCTTCCTGCTCCGCGAGCACCTGGAAGCGGTGCTCTCGACCCTCGGCGAGCGGGAGCGC
AAAGTGGTCCAGCTCCGCTACGGACTCGCCGACGGGCGGCCGCGCACCCTGGAGGAGATCGGGCGGATCTTCGGGGTGAC
CCGGGAGCGGATCCGGCAGATCGAGTCCAAGACCCTCAACAAGCTCCGCGACCACGCCTTCGCGGACCAGCTGCGCGGCT
ACCTGGACTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (78-111)

• Sigma-70, region 4 (Sigma70_r4) (311-363)

• Sigma-70 region 3 (Sigma70_r3) (222-298)

• Sigma-70 region 2 (Sigma70_r2) (143-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	42	93.085	0.391