Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG730_RS28245 Genome accession   NZ_CP108414
Coordinates   6226687..6228420 (-) Length   577 a.a.
NCBI ID   WP_327306868.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01298     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6221687..6233420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG730_RS28225 (OG730_28205) - 6222206..6222784 (-) 579 WP_327306864.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG730_RS28230 (OG730_28210) - 6222803..6223408 (-) 606 WP_327306865.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG730_RS28235 (OG730_28215) rpoS 6223569..6224699 (+) 1131 WP_327306866.1 RNA polymerase sigma factor Regulator
  OG730_RS28240 (OG730_28220) rcrQ 6224765..6226690 (-) 1926 WP_327306867.1 ABC transporter ATP-binding protein Regulator
  OG730_RS28245 (OG730_28225) rcrP 6226687..6228420 (-) 1734 WP_327306868.1 ABC transporter ATP-binding protein Regulator
  OG730_RS28250 (OG730_28230) - 6228653..6229018 (+) 366 WP_327306869.1 hypothetical protein -
  OG730_RS28255 (OG730_28235) - 6229076..6230515 (-) 1440 WP_327306870.1 FGGY family carbohydrate kinase -
  OG730_RS28260 (OG730_28240) - 6230666..6230974 (-) 309 WP_327306871.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62634.64 Da        Isoelectric Point: 5.7576

>NTDB_id=660262 OG730_RS28245 WP_327306868.1 6226687..6228420(-) (rcrP) [Streptomyces sp. NBC_01298]
MLIRLLRTHLGPYRKPISVLVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLVQLVCNAGAVYYGA
RTAAAFGRDVRAGVFDRVQSFSARELGHFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIFMALSLDVKLSGV
LLAVVPILGLSVGAIVLKTRPLFRKMQTRLDTVNRVLREQITGNRVIRAFIRDDYEKERFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVVWFGAMRIDSGDMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTESSVVP
PTDPVRKLLHHGRLELRGADFRYPGAEAPVLRGVDLVARAGETTAVIGSTGSGKSTLLGLIPRLFDATGGDVLVDGEDVR
RLDPDLLARTVGMVPQKPYLFSGTVASNLRYGRPDATDEELWHALDVAQAKGFVSELEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRSALARETEEATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=660262 OG730_RS28245 WP_327306868.1 6226687..6228420(-) (rcrP) [Streptomyces sp. NBC_01298]
GTGCTCATACGACTTCTGCGGACCCACCTGGGCCCGTACCGGAAACCGATCTCCGTACTGGTCCTGCTGCAGCTGCTGCA
GACCAGCGCGAGCCTCTACCTGCCCACCCTGAACGCCGACATCATTGACAACGGTGTCGTCAACGGCGACACCGGCTACA
TCCTGCGCTTCGGCGCCCTGATGCTCGGCGTCTCGCTCGTGCAGCTCGTCTGCAACGCCGGCGCCGTCTACTACGGGGCC
CGCACGGCCGCGGCCTTCGGCCGGGACGTCCGGGCCGGCGTCTTCGACCGCGTGCAGAGCTTCTCCGCGCGTGAGCTCGG
CCACTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTGCAGCAGATCCAGATGCTCGTGCTGATGACCTTCA
CCCTGATGGTCTCCGCGCCGATCATGTGCGTCGGCGGCATCTTCATGGCGCTCTCGCTGGACGTGAAGCTCTCGGGCGTC
CTGCTCGCCGTCGTCCCGATCCTCGGCCTGTCGGTCGGCGCGATCGTGCTGAAGACCCGCCCGCTGTTCCGCAAGATGCA
GACGCGGCTGGACACGGTCAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCATCCGCGACG
ACTACGAGAAGGAGCGCTTCCGCGAGGCCAACGCCGACCTCACCGGCGTCTCGCTGGCGGCCGGCAAGCTGCTCGCGCTG
ATGTTCCCGACCGTGATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCGTCTGGTTCGGCGCGATGCGCATCGACTCCGG
CGACATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTGGACACCGAATCCAGCGTGGTCCCG
CCCACCGACCCGGTCCGCAAGCTGCTCCACCACGGCCGCCTCGAACTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCCGTGCTGCGCGGGGTCGACCTCGTGGCCCGGGCCGGCGAGACCACCGCGGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTGGGGCTGATCCCCCGGCTCTTCGACGCGACCGGCGGCGACGTGCTCGTCGACGGCGAGGACGTACGG
CGCCTCGACCCGGACCTGCTCGCCAGGACGGTCGGCATGGTGCCGCAGAAGCCGTACCTCTTCTCCGGCACCGTCGCCAG
CAACCTGCGCTACGGGCGCCCCGACGCCACCGACGAGGAGCTCTGGCACGCACTGGACGTCGCGCAGGCCAAGGGCTTCG
TGTCCGAGCTGGAGGGCGGGCTCGACGCGCCGATCGCCCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGCCAGCGGCTC
GCGATCGCGCGCACACTCGTACAGCGCCCGGAGATCTACCTGTTCGACGACTCCTTCTCCGCCCTGGACTACGCCACGGA
CGCGGCGCTGCGCTCCGCGCTCGCCCGCGAGACCGAAGAGGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCGGACCGGATCATCGTCCTCGACGAGGGGCAGGTGGTGGGCGAGGGGCGCCACCACGAGCTGATGGCCGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.893

100

0.412