Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MJ749_RS21295 Genome accession   NZ_CP092779
Coordinates   4830050..4831003 (-) Length   317 a.a.
NCBI ID   WP_064963587.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain ZJ-9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4825050..4836003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ749_RS21270 (MJ749_21270) - 4825518..4826429 (-) 912 WP_031462257.1 aldo/keto reductase -
  MJ749_RS21275 (MJ749_21275) - 4826588..4827331 (-) 744 WP_017425551.1 alpha/beta hydrolase -
  MJ749_RS21280 (MJ749_21280) - 4827365..4828345 (-) 981 WP_017425552.1 siderophore ABC transporter substrate-binding protein -
  MJ749_RS21285 (MJ749_21285) - 4828358..4829116 (-) 759 WP_013373133.1 ABC transporter ATP-binding protein -
  MJ749_RS21290 (MJ749_21290) - 4829110..4830060 (-) 951 WP_017425553.1 iron chelate uptake ABC transporter family permease subunit -
  MJ749_RS21295 (MJ749_21295) ceuB 4830050..4831003 (-) 954 WP_064963587.1 ABC transporter permease Machinery gene
  MJ749_RS21300 (MJ749_21300) - 4831328..4832005 (+) 678 WP_031462262.1 response regulator transcription factor -
  MJ749_RS21305 (MJ749_21305) - 4832006..4832923 (+) 918 WP_031462263.1 sensor histidine kinase -
  MJ749_RS21310 (MJ749_21310) - 4833031..4833708 (+) 678 WP_017425557.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34732.72 Da        Isoelectric Point: 9.9012

>NTDB_id=660262 MJ749_RS21295 WP_064963587.1 4830050..4831003(-) (ceuB) [Paenibacillus polymyxa strain ZJ-9]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLSNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=660262 MJ749_RS21295 WP_064963587.1 4830050..4831003(-) (ceuB) [Paenibacillus polymyxa strain ZJ-9]
ATGAAATTGCGCTATTTAATATTAGCTTTTCTGGTACTGGCCTTCGCCTCGGTGTTCATCGGTGTTCATGATGTGACTCC
ACTTGATTTGTTCCACTTATCTAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTTCCACGTTTGATCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTCATCATGCAGCAGCTTACCCGGAACCGATTTGTTTCGCCCACCACCGCA
GGGACGATGGATGCGGCACGATTAGGTGTGCTGATGGCCATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACGCTGATTTTTATGAAGATATTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTTGGTCTGATGTTTGGGGGCATTTTAAATTCAGTGACGACCTTTTTTGCCTACAAATATAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGCGATTTTTCTCTAATCATGAGTGGCCGCTACGAGATGCTGTATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGTATGGGTGAGGATTTTGCAGCCAACTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTCATCTTAACCGTTGGTACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGTATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCTCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTAAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508