Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG730_RS28240 Genome accession   NZ_CP108414
Coordinates   6224765..6226690 (-) Length   641 a.a.
NCBI ID   WP_327306867.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01298     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6219765..6231690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG730_RS28220 (OG730_28200) - 6220080..6222209 (+) 2130 WP_327306863.1 molybdopterin oxidoreductase family protein -
  OG730_RS28225 (OG730_28205) - 6222206..6222784 (-) 579 WP_327306864.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG730_RS28230 (OG730_28210) - 6222803..6223408 (-) 606 WP_327306865.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG730_RS28235 (OG730_28215) rpoS 6223569..6224699 (+) 1131 WP_327306866.1 RNA polymerase sigma factor Regulator
  OG730_RS28240 (OG730_28220) rcrQ 6224765..6226690 (-) 1926 WP_327306867.1 ABC transporter ATP-binding protein Regulator
  OG730_RS28245 (OG730_28225) rcrP 6226687..6228420 (-) 1734 WP_327306868.1 ABC transporter ATP-binding protein Regulator
  OG730_RS28250 (OG730_28230) - 6228653..6229018 (+) 366 WP_327306869.1 hypothetical protein -
  OG730_RS28255 (OG730_28235) - 6229076..6230515 (-) 1440 WP_327306870.1 FGGY family carbohydrate kinase -
  OG730_RS28260 (OG730_28240) - 6230666..6230974 (-) 309 WP_327306871.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 68887.38 Da        Isoelectric Point: 5.2034

>NTDB_id=660261 OG730_RS28240 WP_327306867.1 6224765..6226690(-) (rcrQ) [Streptomyces sp. NBC_01298]
MSGPGGRMMMGPPTTRSMDFKGSGKRLLSALARDRAKLWGMILAVVGSVAASVTGPKILGEATDLVFAGIVGRSMKEGLT
KQQALDGLRARGEGGMADMLSGTDFTPGKGIDFGAVGVVALWALAVFTVAGLLMLVATRLSNQIMNGTVYRMREELQAKL
SRLPLSYFDQQKRGEVLSRATNDIDNIGQTIQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALVTIPVSAYVAAKIGKK
SQPQFVAQWKSTGALNAHVEEMYSGHTLVKVFGRQKESAALFAEQNEALYRASFKAQLVSGIMQPVMLFISNINYVLVAV
VGGLRVASGTLSIGDVQAFIQYTRQFSMPLTQVASMANLVQSGVASAERVYELLDAPEQEADAEVPERPENLRGQVTFDK
VAFRYEPDKPLIENLSLSVDPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRSGIGMVLQDTW
LFGGTIAENIAYGATREVTRAEVEEAARAAHADRFVRTLPEGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADLILVMESGSIVEQGTHEELLLSDGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=660261 OG730_RS28240 WP_327306867.1 6224765..6226690(-) (rcrQ) [Streptomyces sp. NBC_01298]
GTGAGCGGGCCCGGAGGACGGATGATGATGGGACCGCCGACGACGCGGTCCATGGACTTCAAGGGCTCGGGCAAGCGGCT
GCTGAGTGCGCTGGCGCGGGACCGGGCCAAGCTGTGGGGCATGATCCTCGCGGTCGTCGGCAGCGTCGCCGCGTCGGTGA
CCGGGCCCAAGATCCTCGGCGAGGCCACCGACCTCGTCTTCGCGGGGATCGTCGGCCGGAGCATGAAGGAGGGCCTCACC
AAGCAGCAGGCACTGGACGGTCTGCGCGCCAGGGGCGAGGGCGGGATGGCGGACATGCTGTCCGGCACCGACTTCACCCC
GGGCAAGGGCATCGACTTCGGCGCGGTCGGGGTGGTGGCGCTGTGGGCGCTGGCCGTCTTCACGGTCGCCGGCCTGCTGA
TGCTGGTCGCCACCCGGCTGTCGAACCAGATCATGAACGGCACCGTGTACCGGATGCGCGAGGAGCTGCAGGCGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTCAGCCGGGCCACGAACGACATCGACAACAT
CGGGCAGACGATCCAGCAGACGATGGGTCAGCTGCTCAACTCGCTCCTGACGATCGTCGGCGTGCTGGCGATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCATCCCGGTGTCCGCGTACGTCGCCGCGAAGATCGGCAAGAAG
TCGCAGCCGCAGTTCGTGGCGCAGTGGAAGTCCACGGGCGCCCTGAACGCGCACGTCGAGGAGATGTACTCGGGCCACAC
CCTGGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCCCTGTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCCT
TCAAGGCGCAGCTGGTCAGCGGGATCATGCAGCCGGTGATGCTGTTCATCTCGAACATCAACTACGTGCTCGTCGCGGTC
GTCGGCGGTCTGCGGGTGGCCTCGGGCACCCTGTCGATCGGTGACGTCCAGGCCTTCATCCAGTACACGCGCCAGTTCTC
CATGCCGCTCACGCAGGTCGCCTCCATGGCGAACCTGGTGCAGTCCGGCGTCGCCTCCGCGGAGCGGGTCTACGAGCTGC
TGGACGCGCCCGAGCAGGAGGCGGACGCGGAGGTTCCGGAGCGCCCGGAGAACCTGCGCGGGCAGGTCACCTTCGACAAG
GTCGCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCGCTGAGCGTCGACCCCGGACAGACGGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCG
CCCTCGACGGGGTGGACATCGCCAAGATGACCCGCGAGGAACTGCGCAGCGGCATCGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGCACCATCGCCGAGAACATCGCCTACGGGGCCACGCGCGAGGTCACGCGCGCCGAGGTCGAGGAGGCCGC
GCGGGCGGCCCACGCCGACCGGTTCGTCCGTACCCTGCCCGAGGGCTACGACACGGTGCTGGACGACGAGGGCGCCGGCG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTGCTCGACGAGGCG
ACGAGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCACGGCCGTACGTCCTTCGT
GATCGCGCACCGGCTGTCCACGATCCGCGACGCCGACCTGATCCTGGTGATGGAGAGCGGCTCGATCGTGGAACAGGGCA
CGCACGAGGAGCTGCTGCTCTCGGACGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTC
GACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(413-562)

ABC transporter transmembrane region (ABC_membrane)

(57-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.968

96.724

0.396