Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   MK616_RS12260 Genome accession   NZ_CP092778
Coordinates   2528709..2529779 (-) Length   356 a.a.
NCBI ID   WP_014418378.1    Uniprot ID   A0AAP4DGV9
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2523709..2534779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS12210 (MK616_12210) sipW 2523768..2524352 (-) 585 WP_012117977.1 signal peptidase I SipW -
  MK616_RS12215 (MK616_12215) tapA 2524324..2524995 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  MK616_RS12220 (MK616_12220) - 2525254..2525583 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  MK616_RS12225 (MK616_12225) - 2525624..2525803 (-) 180 WP_003153093.1 YqzE family protein -
  MK616_RS12230 (MK616_12230) comGG 2525860..2526237 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  MK616_RS12235 (MK616_12235) comGF 2526238..2526633 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  MK616_RS12240 (MK616_12240) comGE 2526647..2526961 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  MK616_RS12245 (MK616_12245) comGD 2526945..2527382 (-) 438 WP_095061019.1 competence type IV pilus minor pilin ComGD Machinery gene
  MK616_RS12250 (MK616_12250) comGC 2527372..2527680 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene
  MK616_RS12255 (MK616_12255) comGB 2527685..2528722 (-) 1038 WP_053284924.1 competence type IV pilus assembly protein ComGB Machinery gene
  MK616_RS12260 (MK616_12260) comGA 2528709..2529779 (-) 1071 WP_014418378.1 competence type IV pilus ATPase ComGA Machinery gene
  MK616_RS12265 (MK616_12265) - 2529972..2530922 (-) 951 WP_240680061.1 magnesium transporter CorA family protein -
  MK616_RS12270 (MK616_12270) - 2531068..2532369 (+) 1302 WP_029973873.1 hemolysin family protein -
  MK616_RS12275 (MK616_12275) - 2532407..2533237 (-) 831 WP_025649847.1 STAS domain-containing protein -
  MK616_RS12285 (MK616_12285) - 2533444..2533824 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  MK616_RS12290 (MK616_12290) - 2534061..2534306 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40529.81 Da        Isoelectric Point: 9.3485

>NTDB_id=660210 MK616_RS12260 WP_014418378.1 2528709..2529779(-) (comGA) [Bacillus amyloliquefaciens strain WF2020]
MKNIETYSRNIINEAYTARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKQQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=660210 MK616_RS12260 WP_014418378.1 2528709..2529779(-) (comGA) [Bacillus amyloliquefaciens strain WF2020]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAGGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGTG
TAAGGCTTATTTCTCATTTCAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGAAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACAGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCAGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCAGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCGACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAACGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGCTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCAATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTTGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.303

100

0.823
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374