Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MK616_RS12200 Genome accession   NZ_CP092778
Coordinates   2522535..2522870 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2517535..2527870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS12180 (MK616_12180) gcvT 2518141..2519241 (-) 1101 WP_061890721.1 glycine cleavage system aminomethyltransferase GcvT -
  MK616_RS12185 (MK616_12185) - 2519665..2521335 (+) 1671 WP_021494309.1 DEAD/DEAH box helicase -
  MK616_RS12190 (MK616_12190) - 2521357..2522151 (+) 795 WP_014418368.1 YqhG family protein -
  MK616_RS12195 (MK616_12195) sinI 2522328..2522501 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  MK616_RS12200 (MK616_12200) sinR 2522535..2522870 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  MK616_RS12205 (MK616_12205) tasA 2522918..2523703 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  MK616_RS12210 (MK616_12210) sipW 2523768..2524352 (-) 585 WP_012117977.1 signal peptidase I SipW -
  MK616_RS12215 (MK616_12215) tapA 2524324..2524995 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  MK616_RS12220 (MK616_12220) - 2525254..2525583 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  MK616_RS12225 (MK616_12225) - 2525624..2525803 (-) 180 WP_003153093.1 YqzE family protein -
  MK616_RS12230 (MK616_12230) comGG 2525860..2526237 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  MK616_RS12235 (MK616_12235) comGF 2526238..2526633 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  MK616_RS12240 (MK616_12240) comGE 2526647..2526961 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  MK616_RS12245 (MK616_12245) comGD 2526945..2527382 (-) 438 WP_095061019.1 competence type IV pilus minor pilin ComGD Machinery gene
  MK616_RS12250 (MK616_12250) comGC 2527372..2527680 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=660204 MK616_RS12200 WP_003153104.1 2522535..2522870(+) (sinR) [Bacillus amyloliquefaciens strain WF2020]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=660204 MK616_RS12200 WP_003153104.1 2522535..2522870(+) (sinR) [Bacillus amyloliquefaciens strain WF2020]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991