Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OG730_RS05205 Genome accession   NZ_CP108414
Coordinates   1133256..1135661 (+) Length   801 a.a.
NCBI ID   WP_327303060.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01298     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1128256..1140661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG730_RS05180 (OG730_05175) - 1128478..1128699 (+) 222 WP_327303055.1 dodecin -
  OG730_RS05185 (OG730_05180) - 1128807..1129301 (-) 495 WP_327303056.1 hypothetical protein -
  OG730_RS05190 (OG730_05185) - 1129449..1130975 (+) 1527 WP_327303057.1 hypothetical protein -
  OG730_RS05195 (OG730_05190) - 1131057..1132133 (+) 1077 WP_327303058.1 S41 family peptidase -
  OG730_RS05200 (OG730_05195) - 1132175..1133245 (+) 1071 WP_327303059.1 LLM class flavin-dependent oxidoreductase -
  OG730_RS05205 (OG730_05200) uvrA 1133256..1135661 (+) 2406 WP_327303060.1 excinuclease ABC subunit UvrA Machinery gene
  OG730_RS05210 (OG730_05205) - 1135719..1136084 (-) 366 WP_327303061.1 cupin domain-containing protein -
  OG730_RS05215 (OG730_05210) - 1136172..1136819 (-) 648 WP_327303062.1 hypothetical protein -
  OG730_RS05220 (OG730_05215) - 1136921..1137667 (-) 747 WP_327303063.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  OG730_RS05225 (OG730_05220) - 1137664..1139616 (-) 1953 WP_327303064.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  OG730_RS05230 (OG730_05225) - 1139618..1140322 (-) 705 WP_327303065.1 succinate dehydrogenase -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 85029.26 Da        Isoelectric Point: 7.2160

>NTDB_id=660203 OG730_RS05205 WP_327303060.1 1133256..1135661(+) (uvrA) [Streptomyces sp. NBC_01298]
MHQPVAPAPHAHDPYVRVRGAREHNLRGVDVDVPRDALTVFTGVSGSGKSSLAFGTLFAEAQRRYFESVAPYARRLIHQI
GAPKVDSVTGLPPAVSLEQRRSSPGSRSSVGTVTMLSNSLRMLYSRAGSYPPGAERLDSDAFSPNTAAGACPSCHGLGRV
HGTSEELLVPDAGLSIRQGAIAAWPGAWQGKNLRDILEALGHDVDAPWRELPAADREWILFTEEQPVVTVHPVREADRIQ
RPYQGTYMSAHRYVMRTFSDSKSATLRARAERFLNHAPCPVCEGRRLRPEALAVTFAGRTIAELAALALTDLDGVLAAAR
GGGEASRVLTEDLRSRIGPVTELGLGYLSLDRGAPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLGV
LDRLKAAGNTLFVVEHDLAVVRHADWLVDVGPLAGEHGGRVLHSGPPDALAAVAESATARYLFGARRPDERPSGAPRQAT
GSVRLSGVERHNLRDVAAEFPLGVFTAVTGVSGSGKSTLVGQVLAGEVHERLAEPEFPVRRLVEVDQKPIGRTPRSNLAT
YTGLFDVVRRLFTAAPESKARGWKAGRFSFNVPGGRCESCQGEGFVSVELLFLPSTYAPCPQCAGARYNSETLEVRYSGL
NIAEVLALTVESAASFFAGVPAAARSLGALSDIGLGYLRLGQPATELSGGEAQRIKLATELQRVRRDHTLYLLDEPTTGL
HPADVTVLLRQLHGLVDAGHSVVVVEHDMTVVAGADWVIDLGPGGGADGGRVVAAGTPAEVAGATGSRTAPYLARALAGQ
P

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=660203 OG730_RS05205 WP_327303060.1 1133256..1135661(+) (uvrA) [Streptomyces sp. NBC_01298]
ATGCACCAGCCCGTCGCCCCCGCCCCGCACGCCCACGATCCCTACGTCCGCGTCCGCGGTGCCCGGGAGCACAATCTGCG
CGGGGTCGACGTGGACGTTCCACGGGACGCGCTGACGGTGTTCACCGGGGTCTCCGGCTCCGGGAAGAGCTCGCTGGCCT
TCGGCACGCTCTTCGCCGAGGCCCAGCGCCGGTACTTCGAGTCCGTGGCCCCGTACGCCCGGCGGCTGATCCACCAGATC
GGCGCGCCGAAGGTCGATTCCGTCACCGGGCTCCCGCCGGCCGTCTCGCTGGAGCAGCGGCGCTCCTCCCCCGGGTCCCG
GTCCTCGGTCGGCACGGTGACCATGCTGTCCAACTCCCTGCGGATGCTGTACTCGCGGGCGGGCTCCTACCCGCCGGGCG
CCGAGCGCCTGGACTCCGACGCGTTCTCCCCCAACACCGCCGCCGGGGCCTGCCCCTCCTGTCACGGCCTGGGCCGGGTA
CACGGCACCAGCGAGGAACTGCTGGTTCCCGACGCGGGCCTGTCGATCCGTCAGGGGGCCATCGCCGCCTGGCCGGGCGC
CTGGCAGGGCAAGAACCTGCGCGACATCCTGGAGGCCCTCGGCCACGACGTGGACGCGCCCTGGCGGGAGCTCCCGGCGG
CGGACCGCGAATGGATCCTGTTCACCGAGGAACAGCCGGTGGTGACGGTGCACCCGGTGCGGGAGGCCGACCGGATCCAA
CGGCCGTACCAGGGCACGTACATGAGCGCCCACCGGTACGTGATGCGGACCTTCTCCGACAGCAAGAGCGCCACCTTGCG
GGCCCGGGCCGAGCGGTTCCTCAACCATGCGCCGTGCCCGGTGTGCGAGGGCAGGCGACTGCGCCCGGAGGCCCTGGCCG
TGACCTTCGCGGGCCGCACCATCGCGGAGCTGGCGGCGCTGGCGCTGACGGATCTGGACGGGGTACTGGCCGCCGCTCGC
GGCGGCGGCGAGGCCTCCCGGGTACTCACGGAGGACCTGCGCTCCCGGATCGGCCCGGTCACCGAGCTGGGGCTGGGCTA
CCTGAGCCTGGACCGCGGCGCCCCGACCCTGTCGGCGGGAGAGCTGCAACGACTGCGACTGGCGACGCAGTTGCGTTCGG
GGCTGTTCGGCGTGGTGTACGTACTGGACGAGCCGTCGGCGGGGCTGCACCCGGCCGACACGGAGGCGCTGCTCGGCGTC
CTGGACCGGCTCAAGGCGGCCGGGAACACGCTGTTCGTGGTGGAGCACGATCTGGCCGTCGTGCGGCACGCGGACTGGCT
GGTGGACGTCGGCCCGCTGGCCGGGGAGCACGGCGGACGGGTGCTGCACAGCGGGCCGCCGGACGCTCTGGCCGCGGTGG
CGGAATCGGCGACGGCCCGGTACCTGTTCGGAGCCCGGCGGCCGGACGAACGGCCCTCGGGGGCGCCGCGGCAGGCCACC
GGGTCGGTCCGGCTCAGCGGAGTCGAGCGGCACAACCTTCGGGACGTGGCGGCGGAGTTCCCGCTCGGGGTGTTCACGGC
GGTGACCGGGGTGTCGGGGTCCGGGAAGTCCACGCTCGTGGGCCAGGTGCTCGCGGGGGAGGTCCACGAGCGGCTGGCGG
AGCCGGAGTTCCCGGTACGCCGGCTGGTGGAGGTGGACCAGAAGCCGATCGGCCGGACGCCGCGCTCCAACCTGGCCACG
TACACGGGGCTGTTCGACGTGGTCCGCCGGCTCTTCACGGCGGCGCCGGAATCCAAGGCACGGGGCTGGAAGGCGGGCCG
CTTCTCCTTCAACGTCCCGGGCGGGCGCTGCGAGTCCTGCCAGGGCGAGGGCTTCGTCTCGGTGGAGCTGCTGTTCCTGC
CCAGTACGTACGCCCCGTGCCCCCAGTGCGCCGGGGCCCGGTACAACTCCGAGACCCTGGAGGTCCGTTACTCGGGCCTG
AACATCGCCGAGGTGCTCGCCCTGACCGTGGAGTCGGCGGCCTCCTTCTTCGCCGGGGTCCCGGCGGCGGCCCGCAGCCT
CGGCGCGCTGTCGGACATCGGCCTGGGGTACCTGCGGCTCGGGCAGCCCGCCACGGAACTCTCGGGCGGCGAGGCTCAGC
GCATCAAGCTGGCGACGGAACTCCAGCGCGTGCGCCGCGACCACACCCTGTACCTGCTGGACGAGCCGACGACCGGTCTC
CATCCGGCCGATGTCACGGTGCTGCTGCGGCAGTTGCACGGCCTGGTGGACGCGGGACATTCGGTGGTGGTCGTGGAGCA
CGACATGACGGTCGTGGCGGGCGCCGACTGGGTCATCGACCTGGGCCCCGGCGGCGGTGCGGACGGCGGCCGGGTGGTGG
CCGCGGGCACGCCCGCCGAGGTGGCCGGCGCCACGGGCAGCCGTACGGCGCCCTACCTGGCACGGGCCCTCGCCGGACAG
CCGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(493-717)

UvrA DNA-binding domain (UvrA_DNA-bind)

(166-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

43.045

85.268

0.367
  uvrA Streptococcus pneumoniae TIGR4

43.045

85.268

0.367
  uvrA Streptococcus pneumoniae D39

43.045

85.268

0.367