Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG243_RS32780 Genome accession   NZ_CP108392
Coordinates   7225509..7227629 (+) Length   706 a.a.
NCBI ID   WP_326631150.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01318     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7220509..7232629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG243_RS32755 (OG243_32805) - 7220976..7221338 (+) 363 WP_327240416.1 cupin domain-containing protein -
  OG243_RS32760 (OG243_32810) - 7221420..7222709 (-) 1290 WP_327240417.1 MFS transporter -
  OG243_RS32765 (OG243_32815) - 7222779..7223345 (-) 567 WP_326814235.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG243_RS32770 (OG243_32820) - 7223403..7224362 (-) 960 WP_326631146.1 glycerophosphodiester phosphodiesterase family protein -
  OG243_RS32775 (OG243_32825) - 7224578..7225468 (+) 891 WP_326631148.1 MHYT domain-containing protein -
  OG243_RS32780 (OG243_32830) uvrB 7225509..7227629 (+) 2121 WP_326631150.1 excinuclease ABC subunit UvrB Machinery gene
  OG243_RS32785 (OG243_32835) - 7227762..7228340 (+) 579 WP_030919738.1 TerD family protein -
  OG243_RS32790 (OG243_32840) - 7228518..7230470 (+) 1953 WP_326631151.1 TerD family protein -
  OG243_RS32795 (OG243_32845) - 7230725..7231726 (+) 1002 WP_326631153.1 TerC family protein -
  OG243_RS32800 (OG243_32850) - 7231777..7232433 (-) 657 WP_327240418.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 79495.28 Da        Isoelectric Point: 4.8294

>NTDB_id=660029 OG243_RS32780 WP_326631150.1 7225509..7227629(+) (uvrB) [Streptomyces sp. NBC_01318]
MRPVSKIERSVAPFEVVSSYQPSGDQPAAIAELERRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYIPQSDTYIEKDSSINDEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGDEIDRDQLLRRFVEIQYTRNDIAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDNELYVFPASHYVAGPERMEKAVNGIEQELEHRLAELEKQGKLLEAQRLRMRTTYDIEMMRQIGTCSGIENYSMH
MDGREPGTAPNTLLDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRSLVDHGFRLPSALDNRPLRWEEFVERIGQTVYL
SATPGKYELSRGDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRKRTERDERVLVTTLTKKMSEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRREKQIAYNTERGIDPQPLRKKINDIVATIAREEIDTEELLGTGYRQTKGDKAPVPALGGKAG
KAAGAKKAGAVVTDRPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMREAGLA

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=660029 OG243_RS32780 WP_326631150.1 7225509..7227629(+) (uvrB) [Streptomyces sp. NBC_01318]
ATGCGGCCCGTTTCGAAGATCGAACGTTCGGTGGCGCCTTTCGAGGTCGTCAGTTCCTACCAGCCCAGCGGCGACCAGCC
CGCGGCCATCGCCGAGCTGGAACGGCGCATCCGGGCAGGTGAGAAGGATGTCGTGCTGCTCGGCGCGACCGGCACCGGGA
AATCGGCGACCACCGCCTGGATGATCGAGAAGCTCCAGCGCCCCACGCTGGTGATGGCGCCGAACAAGACCCTCGCGGCC
CAGCTGGCGAACGAGTTCCGCGAACTGCTCCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACATTCCGCAGTCGGACACGTACATCGAGAAGGATTCGTCGATCAACGACGAGGTCGAGCGGCTGCGCCACT
CCGCGACGAATTCGCTGCTCACCCGCCGTGACGTGGTCGTGGTCGCCTCGGTGTCCTGCATCTACGGCCTCGGTACGCCA
CAGGAGTACGTGGACCGCATGGTCCCGCTCAAGGTGGGCGACGAGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTGGA
GATCCAGTACACCCGCAACGACATCGCGTTCACCCGGGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTCTCCACCCTCCATCCGCTCACCGGC
GAGGTCATCAGCGAGGACAACGAGCTCTATGTCTTCCCCGCCAGCCACTACGTGGCGGGACCGGAGCGCATGGAGAAGGC
GGTCAACGGCATCGAGCAGGAGCTGGAGCACCGCCTCGCCGAGCTGGAGAAGCAGGGCAAGCTGCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACGTACGACATCGAGATGATGCGCCAGATCGGCACCTGCTCCGGTATCGAGAACTACTCGATGCAC
ATGGACGGCCGCGAGCCCGGCACCGCCCCCAACACCCTCCTCGACTACTTCCCCGAGGACTTCCTGCTCGTCATCGACGA
GTCGCATGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCAGCCTCGTCGACCACGGCT
TCCGGCTGCCGTCCGCCCTCGACAACCGCCCTCTGAGGTGGGAGGAGTTCGTGGAGCGGATCGGTCAGACCGTCTATCTC
TCCGCCACCCCGGGCAAGTACGAGCTGTCCCGCGGCGACGGGTTCGTGGAGCAGATCATCCGGCCCACCGGCCTCGTCGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGAGGGACG
AGCGGGTCCTGGTCACCACCCTCACCAAGAAGATGTCCGAAGACCTCACGGACTACTTCCTGGAGCTGGGCATCCAGGTC
CGTTATCTGCACAGTGACGTCGACACGCTGCGCCGCATCGAGCTGCTGCGTGAACTGCGCGCCGGTGAGTACGACGTGCT
GGTCGGGATCAACCTGCTGCGCGAGGGGCTCGACCTGCCCGAGGTGTCTCTGGTGGCCATCCTCGACGCCGACAAGCAGG
GCTTCCTGCGCTCCGGGACGTCTCTCATCCAGACCATCGGCCGCGCGGCCCGCAATGTGTCCGGCCAGGTCCATATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGCCGCCGGGAGAAGCAGATCGCGTACAACAC
CGAGCGCGGCATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCGACGATCGCCCGCGAGGAGATCGACA
CCGAGGAGCTGCTCGGCACCGGCTACCGCCAGACGAAGGGCGACAAGGCCCCGGTCCCCGCGCTCGGCGGCAAGGCGGGC
AAGGCGGCCGGAGCCAAGAAGGCCGGCGCGGTGGTCACCGACCGGCCCGCGACCGAGCTCGCCGGGATCATCGAGGAGAT
GACCGACCGGATGCGGGCAGCCGCCGCGGACCTGCAGTTCGAGGTGGCCGCCCGACTGCGCGACGAGGTCGGCGAGCTGA
AGAAGGAGCTGCGCCAGATGCGCGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(24-144)

UvrB/uvrC motif (UVR)

(664-696)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)

UvrB interaction domain (UvrB_inter)

(169-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.226

97.025

0.555
  uvrB Streptococcus pneumoniae R6

57.226

97.025

0.555
  uvrB Streptococcus pneumoniae D39

57.226

97.025

0.555