Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   SMUNUM_RS02090 Genome accession   NZ_AP014571
Coordinates   399374..400408 (+) Length   344 a.a.
NCBI ID   WP_002267541.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 394374..405408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS02065 (SMNUM_0364) tsaE 395708..396151 (+) 444 WP_002265162.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SMUNUM_RS02070 (SMNUM_0365) brpA 396482..397702 (+) 1221 WP_002262611.1 biofilm formation/cell division transcriptional regulator BrpA -
  SMUNUM_RS02075 (SMNUM_0366) - 397872..398165 (-) 294 WP_019805334.1 hypothetical protein -
  SMUNUM_RS02080 (SMNUM_0367) - 398162..398581 (-) 420 WP_002262609.1 HIT family protein -
  SMUNUM_RS02085 (SMNUM_0368) pptA 398646..399371 (+) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  SMUNUM_RS02090 (SMNUM_0369) pptB 399374..400408 (+) 1035 WP_002267541.1 ABC transporter permease Regulator
  SMUNUM_RS02095 (SMNUM_0370) - 400467..401249 (+) 783 WP_019805335.1 cell cycle regulator CcrZ -
  SMUNUM_RS02100 (SMNUM_0371) trmB 401259..401894 (+) 636 WP_002265651.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SMUNUM_RS02110 (SMNUM_0372) rimP 402166..402657 (+) 492 WP_002262604.1 ribosome maturation factor RimP -
  SMUNUM_RS02115 (SMNUM_0373) nusA 402693..403886 (+) 1194 WP_002262603.1 transcription termination factor NusA -
  SMUNUM_RS02120 (SMNUM_0374) - 403904..404200 (+) 297 WP_002263922.1 YlxR family protein -
  SMUNUM_RS02125 - 404193..404495 (+) 303 WP_002262601.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40598.06 Da        Isoelectric Point: 10.6270

>NTDB_id=65959 SMUNUM_RS02090 WP_002267541.1 399374..400408(+) (pptB) [Streptococcus mutans LP13]
MKAIFTKRRFHFINQCSRYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHWPIMLVLVLVVLTLLFWGNIATYLEP
ADQQFLLVREKDIVALIQKAKRRALFFWGTWQTLLLLILAPLFLRLGLALFSFLFLLLFLLFLKGLIIEKKSRAFLKQKG
LNWDHALNQEKKRQQAILKFFSLFTNVKGISNSVKRRAYLDFGTKLLPKETHKAWTNLYLRAFLRSGDYLGLTFRLGFLS
LLSLLFIDNPLMSAGLALLFNYLLLFQLLALYKHYDYQYLTALFPISKAEKKANLKQLLRVILYFLTAVEFCFSFSWQKT
IILLLAMLCLNEVYLPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=65959 SMUNUM_RS02090 WP_002267541.1 399374..400408(+) (pptB) [Streptococcus mutans LP13]
ATGAAGGCAATTTTTACAAAAAGACGATTCCATTTTATCAATCAATGCAGTCGATACCTTCGCTATGTTTTTAATGATCA
TTTTGTTTTAGTATTGATTTTTTTACTAGGTTTTCTTATGGTACAGTATAGTCAGCTGTTAAAACATTTTCCGGCTAATC
ATTGGCCTATCATGCTTGTTTTAGTGTTAGTTGTCTTGACCTTACTATTTTGGGGAAATATAGCGACTTATTTGGAACCA
GCGGATCAGCAATTTCTTTTGGTCAGGGAAAAGGACATTGTTGCTTTAATCCAAAAAGCTAAAAGACGAGCTCTTTTCTT
TTGGGGAACTTGGCAGACACTCTTGCTTCTTATTTTGGCACCTCTTTTTTTACGTTTGGGACTGGCACTTTTTTCTTTTC
TTTTTTTGCTCCTTTTTTTGCTCTTTTTAAAAGGATTGATCATTGAAAAAAAAAGCAGAGCTTTTTTGAAGCAGAAAGGA
CTGAACTGGGATCATGCTCTTAATCAAGAGAAAAAGCGGCAGCAGGCAATTTTAAAATTCTTTTCACTTTTTACCAATGT
TAAAGGAATTTCAAACAGCGTTAAGCGACGGGCTTATTTGGATTTTGGGACAAAATTATTGCCGAAGGAGACTCATAAAG
CGTGGACTAATCTTTATTTAAGAGCTTTTTTACGCAGTGGCGATTATTTAGGACTGACCTTTCGTTTAGGTTTTTTAAGT
CTTTTAAGTCTTCTTTTTATTGATAATCCTTTAATGTCAGCAGGTTTAGCGCTCCTTTTTAATTACCTCTTGCTTTTTCA
ATTGTTGGCTCTTTATAAACATTATGATTATCAATATTTAACAGCCCTTTTTCCCATTTCAAAAGCGGAGAAGAAGGCTA
ATTTGAAACAGTTATTGCGTGTTATTCTATATTTTCTAACAGCTGTTGAATTTTGTTTTAGCTTTTCATGGCAAAAGACA
ATTATTTTACTTTTGGCAATGCTTTGTCTCAATGAAGTTTATCTGCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

51.453

100

0.515

  pptB Streptococcus thermophilus LMD-9

50.872

100

0.509


Multiple sequence alignment