Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SMUNUM_RS02085 Genome accession   NZ_AP014571
Coordinates   398646..399371 (+) Length   241 a.a.
NCBI ID   WP_002262608.1    Uniprot ID   A0AAX1K0Q1
Organism   Streptococcus mutans LP13     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 393646..404371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS02060 (SMNUM_0363) - 394149..395579 (+) 1431 WP_002265163.1 NCS2 family permease -
  SMUNUM_RS02065 (SMNUM_0364) tsaE 395708..396151 (+) 444 WP_002265162.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SMUNUM_RS02070 (SMNUM_0365) brpA 396482..397702 (+) 1221 WP_002262611.1 biofilm formation/cell division transcriptional regulator BrpA -
  SMUNUM_RS02075 (SMNUM_0366) - 397872..398165 (-) 294 WP_019805334.1 hypothetical protein -
  SMUNUM_RS02080 (SMNUM_0367) - 398162..398581 (-) 420 WP_002262609.1 HIT family protein -
  SMUNUM_RS02085 (SMNUM_0368) pptA 398646..399371 (+) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  SMUNUM_RS02090 (SMNUM_0369) pptB 399374..400408 (+) 1035 WP_002267541.1 ABC transporter permease Regulator
  SMUNUM_RS02095 (SMNUM_0370) - 400467..401249 (+) 783 WP_019805335.1 cell cycle regulator CcrZ -
  SMUNUM_RS02100 (SMNUM_0371) trmB 401259..401894 (+) 636 WP_002265651.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SMUNUM_RS02110 (SMNUM_0372) rimP 402166..402657 (+) 492 WP_002262604.1 ribosome maturation factor RimP -
  SMUNUM_RS02115 (SMNUM_0373) nusA 402693..403886 (+) 1194 WP_002262603.1 transcription termination factor NusA -
  SMUNUM_RS02120 (SMNUM_0374) - 403904..404200 (+) 297 WP_002263922.1 YlxR family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26686.26 Da        Isoelectric Point: 4.9888

>NTDB_id=65958 SMUNUM_RS02085 WP_002262608.1 398646..399371(+) (pptA) [Streptococcus mutans LP13]
MLKIENLTGGYVNIPVLKNISFEVADGELVGLIGLNGAGKSTTINEIIGLLQPYEGKISIDGLTLADQEMAYRKKIGFIP
ETPSLYEELTLKEHLEMIAMAYDIKVEAALARAQKLLELFRLEDKLDWFPIHFSKGMKQKVMIICAFIIDPSLFIVDEPF
LGLDPVAISDLTQLLAAEKAKGKSILMSTHVLDSAEKMCDRFVILHHGQIRAQGSLADLRMTFGNAQASLNDIYMTLTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=65958 SMUNUM_RS02085 WP_002262608.1 398646..399371(+) (pptA) [Streptococcus mutans LP13]
ATGTTAAAAATAGAAAATTTGACCGGTGGTTACGTCAACATTCCTGTCTTGAAAAATATCAGTTTTGAGGTTGCTGATGG
TGAGTTGGTCGGGCTCATAGGCCTCAATGGTGCAGGAAAATCAACAACTATCAATGAAATTATTGGACTTTTGCAGCCTT
ATGAAGGCAAAATCAGTATTGATGGACTGACGCTTGCAGATCAAGAAATGGCTTATCGAAAGAAAATTGGGTTTATTCCA
GAAACGCCTAGCCTTTACGAAGAATTAACCTTAAAAGAGCACTTGGAGATGATAGCCATGGCTTATGATATTAAAGTGGA
AGCAGCTTTGGCGCGTGCGCAAAAACTGCTGGAACTTTTTAGATTAGAAGATAAACTGGATTGGTTTCCTATTCATTTTT
CCAAAGGAATGAAACAAAAGGTCATGATTATCTGTGCCTTTATCATTGATCCGAGTCTTTTTATTGTTGATGAGCCTTTC
TTGGGATTGGATCCTGTTGCCATTTCAGATTTGACTCAGCTTTTGGCAGCAGAAAAGGCTAAGGGAAAATCCATTTTGAT
GTCAACTCATGTTTTGGATTCTGCTGAAAAGATGTGTGATCGCTTTGTTATTTTACATCATGGACAAATCCGAGCTCAAG
GAAGTCTCGCTGATTTACGAATGACTTTTGGAAATGCACAAGCCAGCCTTAACGATATCTATATGACTTTGACTAAAGAG
GGTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

76.987

99.17

0.763
  pptA Streptococcus salivarius strain HSISS4

76.569

99.17

0.759

Multiple sequence alignment