Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MKS87_RS19010 Genome accession   NZ_CP092631
Coordinates   3643424..3644113 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain YB-15     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3638424..3649113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS18975 (MKS87_18975) flgN 3638604..3639086 (-) 483 WP_014481048.1 flagellar protein FlgN -
  MKS87_RS18980 (MKS87_18980) flgM 3639102..3639368 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKS87_RS18985 (MKS87_18985) yvyF 3639449..3639868 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  MKS87_RS18990 (MKS87_18990) comFC 3639942..3640664 (-) 723 WP_173614334.1 comF operon protein ComFC Machinery gene
  MKS87_RS18995 (MKS87_18995) comFB 3640628..3640924 (-) 297 WP_015483764.1 late competence protein ComFB -
  MKS87_RS19000 (MKS87_19000) comFA 3640984..3642375 (-) 1392 WP_173614335.1 ATP-dependent helicase ComFA Machinery gene
  MKS87_RS19005 (MKS87_19005) fakBA 3642481..3643326 (-) 846 WP_003244125.1 DegV family protein -
  MKS87_RS19010 (MKS87_19010) degU 3643424..3644113 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MKS87_RS19015 (MKS87_19015) degS 3644196..3645353 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MKS87_RS19020 (MKS87_19020) yvyE 3645570..3646223 (+) 654 WP_003227979.1 YigZ family protein -
  MKS87_RS19025 (MKS87_19025) tagV 3646223..3647389 (+) 1167 WP_173614336.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  MKS87_RS19030 (MKS87_19030) tagO 3647461..3648537 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=659387 MKS87_RS19010 WP_003219701.1 3643424..3644113(-) (degU) [Bacillus subtilis strain YB-15]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=659387 MKS87_RS19010 WP_003219701.1 3643424..3644113(-) (degU) [Bacillus subtilis strain YB-15]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1