Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MKS87_RS19000 Genome accession   NZ_CP092631
Coordinates   3640984..3642375 (-) Length   463 a.a.
NCBI ID   WP_173614335.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-15     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3635984..3647375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS18965 (MKS87_18965) flgL 3636155..3637051 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  MKS87_RS18970 (MKS87_18970) flgK 3637062..3638585 (-) 1524 WP_046160905.1 flagellar hook-associated protein FlgK -
  MKS87_RS18975 (MKS87_18975) flgN 3638604..3639086 (-) 483 WP_014481048.1 flagellar protein FlgN -
  MKS87_RS18980 (MKS87_18980) flgM 3639102..3639368 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKS87_RS18985 (MKS87_18985) yvyF 3639449..3639868 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  MKS87_RS18990 (MKS87_18990) comFC 3639942..3640664 (-) 723 WP_173614334.1 comF operon protein ComFC Machinery gene
  MKS87_RS18995 (MKS87_18995) comFB 3640628..3640924 (-) 297 WP_015483764.1 late competence protein ComFB -
  MKS87_RS19000 (MKS87_19000) comFA 3640984..3642375 (-) 1392 WP_173614335.1 ATP-dependent helicase ComFA Machinery gene
  MKS87_RS19005 (MKS87_19005) fakBA 3642481..3643326 (-) 846 WP_003244125.1 DegV family protein -
  MKS87_RS19010 (MKS87_19010) degU 3643424..3644113 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MKS87_RS19015 (MKS87_19015) degS 3644196..3645353 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MKS87_RS19020 (MKS87_19020) yvyE 3645570..3646223 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52618.60 Da        Isoelectric Point: 9.8572

>NTDB_id=659386 MKS87_RS19000 WP_173614335.1 3640984..3642375(-) (comFA) [Bacillus subtilis strain YB-15]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRTVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=659386 MKS87_RS19000 WP_173614335.1 3640984..3642375(-) (comFA) [Bacillus subtilis strain YB-15]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTCCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGACTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGCGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACAGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.704

100

0.987