Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MKS87_RS18990 Genome accession   NZ_CP092631
Coordinates   3639942..3640664 (-) Length   240 a.a.
NCBI ID   WP_173614334.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-15     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3634942..3645664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS18955 (MKS87_18955) fliW 3635081..3635512 (-) 432 WP_071577299.1 flagellar assembly protein FliW -
  MKS87_RS18960 (MKS87_18960) yviE 3635533..3636108 (-) 576 WP_014481045.1 DUF6470 family protein -
  MKS87_RS18965 (MKS87_18965) flgL 3636155..3637051 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  MKS87_RS18970 (MKS87_18970) flgK 3637062..3638585 (-) 1524 WP_046160905.1 flagellar hook-associated protein FlgK -
  MKS87_RS18975 (MKS87_18975) flgN 3638604..3639086 (-) 483 WP_014481048.1 flagellar protein FlgN -
  MKS87_RS18980 (MKS87_18980) flgM 3639102..3639368 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKS87_RS18985 (MKS87_18985) yvyF 3639449..3639868 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  MKS87_RS18990 (MKS87_18990) comFC 3639942..3640664 (-) 723 WP_173614334.1 comF operon protein ComFC Machinery gene
  MKS87_RS18995 (MKS87_18995) comFB 3640628..3640924 (-) 297 WP_015483764.1 late competence protein ComFB -
  MKS87_RS19000 (MKS87_19000) comFA 3640984..3642375 (-) 1392 WP_173614335.1 ATP-dependent helicase ComFA Machinery gene
  MKS87_RS19005 (MKS87_19005) fakBA 3642481..3643326 (-) 846 WP_003244125.1 DegV family protein -
  MKS87_RS19010 (MKS87_19010) degU 3643424..3644113 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MKS87_RS19015 (MKS87_19015) degS 3644196..3645353 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27491.72 Da        Isoelectric Point: 9.3211

>NTDB_id=659385 MKS87_RS18990 WP_173614334.1 3639942..3640664(-) (comFC) [Bacillus subtilis strain YB-15]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEEWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSRVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=659385 MKS87_RS18990 WP_173614334.1 3639942..3640664(-) (comFC) [Bacillus subtilis strain YB-15]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGAGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAGGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATTATTTTAATAGACGATCTTTATACAACAGGTG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.5

100

0.975