Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG311_RS13875 Genome accession   NZ_CP108362
Coordinates   3056568..3057239 (-) Length   223 a.a.
NCBI ID   WP_030862325.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01343     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3051568..3062239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG311_RS13865 (OG311_13900) - 3053948..3054889 (+) 942 WP_327132059.1 hypothetical protein -
  OG311_RS13870 (OG311_13905) clpX 3055128..3056414 (-) 1287 WP_030159377.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG311_RS13875 (OG311_13910) clpP 3056568..3057239 (-) 672 WP_030862325.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG311_RS13880 (OG311_13915) - 3057326..3057943 (-) 618 WP_030862323.1 ATP-dependent Clp protease proteolytic subunit -
  OG311_RS13885 (OG311_13920) tig 3058230..3059627 (-) 1398 WP_229339717.1 trigger factor -
  OG311_RS13900 (OG311_13935) - 3060178..3061164 (-) 987 WP_327132060.1 site-specific integrase -
  OG311_RS13905 (OG311_13940) - 3061323..3061508 (-) 186 WP_327135574.1 excisionase family DNA-binding protein -
  OG311_RS13910 (OG311_13945) - 3061516..3061845 (-) 330 Protein_2754 replication initiator -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24620.13 Da        Isoelectric Point: 5.0932

>NTDB_id=659385 OG311_RS13875 WP_030862325.1 3056568..3057239(-) (clpP) [Streptomyces sp. NBC_01343]
MVNTQMHMNNLSPASGLHTGMPVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLS
DLEIAAREILRMRDQLETMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIVSTRKNSH

Nucleotide


Download         Length: 672 bp        

>NTDB_id=659385 OG311_RS13875 WP_030862325.1 3056568..3057239(-) (clpP) [Streptomyces sp. NBC_01343]
ATGGTGAACACCCAGATGCACATGAACAACCTCTCTCCCGCGAGCGGCCTCCACACCGGCATGCCGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCCATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTCCTGCTGGCCGCCGGCACCC
CCGGCAAGCGCATGGCGCTGCCGAACGCCCGCGTGCTGATCCACCAGCCGTCCGGCGGCACCGGTCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAGGGAGATCCTGCGCATGCGTGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACCACGCC
GATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACC
AGATCGTCTCGACCCGCAAGAACTCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

85.202

0.448
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

84.305

0.417
  clpP Streptococcus mutans UA159

45.455

88.789

0.404
  clpP Streptococcus thermophilus LMG 18311

45.876

86.996

0.399
  clpP Streptococcus thermophilus LMD-9

45.876

86.996

0.399
  clpP Streptococcus pyogenes JRS4

45.876

86.996

0.399
  clpP Streptococcus pyogenes MGAS315

45.876

86.996

0.399
  clpP Lactococcus lactis subsp. cremoris KW2

46.073

85.65

0.395
  clpP Streptococcus pneumoniae D39

45.55

85.65

0.39
  clpP Streptococcus pneumoniae R6

45.55

85.65

0.39
  clpP Streptococcus pneumoniae TIGR4

45.55

85.65

0.39
  clpP Streptococcus pneumoniae Rx1

45.55

85.65

0.39
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

85.65

0.386