Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG311_RS13015 Genome accession   NZ_CP108362
Coordinates   2875932..2877665 (+) Length   577 a.a.
NCBI ID   WP_327131940.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01343     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2870932..2882665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG311_RS12980 (OG311_13015) - 2871521..2872081 (-) 561 WP_327131936.1 potassium channel family protein -
  OG311_RS12985 (OG311_13020) - 2872333..2873064 (+) 732 WP_327131937.1 hypothetical protein -
  OG311_RS13005 (OG311_13040) - 2873940..2874242 (+) 303 WP_327131938.1 YtxH domain-containing protein -
  OG311_RS13010 (OG311_13045) - 2874316..2875770 (+) 1455 WP_327131939.1 FGGY family carbohydrate kinase -
  OG311_RS13015 (OG311_13050) rcrP 2875932..2877665 (+) 1734 WP_327131940.1 ABC transporter ATP-binding protein Regulator
  OG311_RS13020 (OG311_13055) rcrQ 2877662..2879584 (+) 1923 WP_327131941.1 ABC transporter ATP-binding protein Regulator
  OG311_RS13025 (OG311_13060) - 2879669..2880754 (-) 1086 WP_327131942.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62596.73 Da        Isoelectric Point: 5.1680

>NTDB_id=659382 OG311_RS13015 WP_327131940.1 2875932..2877665(+) (rcrP) [Streptomyces sp. NBC_01343]
MLIRLLRTHLSPYRKPIALLVLLQLLQTSASLYLPTLNADIIDNGVVSGDTGYILRFGALMLGVSLVQLVCNCGAVYFGA
RTAAAVGRDIRASVFDRVQSFSARELGQFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCIGGIAMALSLDVKLSGV
LLAVVPVLGLSVGAIVLRTRPLFRKMQVRLDTVNRVLREQITGNRVIRAFIRDDYEKERFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRIDSGGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTESSVVP
PADPVRELLVRGRLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGDVLVDGEDVR
RLDPELLAKTVGMVPQKPYLFSGTVASNLRYGRPEATDEELWHALDVAQAKGFVSELEGGLDAPITQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSRETEEATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=659382 OG311_RS13015 WP_327131940.1 2875932..2877665(+) (rcrP) [Streptomyces sp. NBC_01343]
GTGCTCATACGACTTCTGCGGACCCATCTGAGTCCGTACCGGAAACCGATCGCCCTGCTGGTCCTGCTGCAACTGCTGCA
GACCAGTGCGAGCCTCTACCTGCCCACGCTGAACGCCGACATCATCGACAACGGTGTCGTCAGCGGGGACACCGGCTACA
TCCTGCGCTTCGGCGCGCTGATGCTCGGCGTCTCCCTCGTCCAGCTCGTGTGCAACTGCGGCGCCGTGTACTTCGGCGCC
CGTACCGCGGCCGCCGTCGGCCGCGACATCCGTGCCTCGGTCTTCGACCGGGTGCAGAGCTTCTCCGCGCGCGAGCTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACGCGTACGACGAACGACGTGCAGCAGATCCAGATGCTGGTCCTGATGACCTTCA
CGCTGATGGTCTCGGCGCCGATCATGTGCATCGGCGGCATCGCCATGGCGCTCTCGCTCGACGTGAAGCTGTCGGGCGTG
CTGCTGGCCGTGGTCCCCGTCCTCGGTCTGTCGGTCGGCGCCATCGTCCTGCGGACGAGGCCGCTGTTCCGGAAGATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCATCCGCGACG
ACTACGAGAAGGAGCGGTTCCGGGAGGCCAACGCCGACCTGACCGGGGTCTCCCTGGCCGCCGGCAAGCTGCTCGCGCTG
ATGTTCCCGACCGTGATCGTGGTCGTGAACATCTCCAGCGTCGCGGTCATCTGGTTCGGCGCGATGCGCATCGACAGCGG
CGGCATGGAGATCGGCCAACTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTGGACACCGAGTCGAGCGTGGTCCCG
CCCGCCGACCCCGTGCGCGAGCTGCTCGTCCGCGGCCGGCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCGCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGCCCCGGCGAGACCACCGCGGTCATCGGTTCCACCGGCAGCGGCA
AGTCCACGCTGCTTGGCCTGGTCCCGCGGCTGTTCGACGCGACCGGCGGCGATGTGCTGGTCGACGGTGAGGACGTACGC
CGCCTCGACCCGGAGCTGCTGGCCAAGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTCTTCTCCGGAACCGTCGCCTC
CAACCTGCGGTACGGGCGTCCCGAGGCCACCGACGAGGAACTGTGGCACGCGCTGGACGTGGCACAGGCCAAGGGCTTCG
TGTCCGAGCTGGAGGGTGGTCTGGACGCGCCCATCACGCAGGGCGGAACGAACGTCTCCGGCGGCCAGCGCCAGCGCCTG
GCCATCGCCCGCACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCGACGGA
CGCGGCGCTGCGCGCAGCGCTCTCCCGCGAGACGGAGGAGGCGACGGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTGCTGGACGAGGGCCAGGTCGTGGGCGAGGGGCGCCACCACGAGCTGATGGCCGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.078

100

0.397