Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MKS87_RS17085 Genome accession   NZ_CP092631
Coordinates   3254533..3255177 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-15     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3249533..3260177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS17050 (MKS87_17050) mrpB 3250723..3251154 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  MKS87_RS17055 (MKS87_17055) mrpC 3251154..3251495 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  MKS87_RS17060 (MKS87_17060) mrpD 3251488..3252969 (+) 1482 WP_173614276.1 Na+/H+ antiporter subunit D -
  MKS87_RS17065 (MKS87_17065) mrpE 3252975..3253451 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  MKS87_RS17070 (MKS87_17070) mrpF 3253451..3253735 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  MKS87_RS17075 (MKS87_17075) mnhG 3253719..3254093 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  MKS87_RS17080 (MKS87_17080) yuxO 3254134..3254514 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  MKS87_RS17085 (MKS87_17085) comA 3254533..3255177 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  MKS87_RS17090 (MKS87_17090) comP 3255258..3257566 (-) 2309 Protein_3310 two-component system sensor histidine kinase ComP -
  MKS87_RS17095 (MKS87_17095) comX 3257581..3257748 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  MKS87_RS17100 (MKS87_17100) comQ 3257736..3258635 (-) 900 WP_173614277.1 ComX modifying isoprenyl transferase ComQ Regulator
  MKS87_RS17105 (MKS87_17105) degQ 3258820..3258960 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  MKS87_RS17110 (MKS87_17110) - 3259182..3259307 (+) 126 WP_003228793.1 hypothetical protein -
  MKS87_RS17115 (MKS87_17115) - 3259421..3259789 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=659379 MKS87_RS17085 WP_003220716.1 3254533..3255177(-) (comA) [Bacillus subtilis strain YB-15]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=659379 MKS87_RS17085 WP_003220716.1 3254533..3255177(-) (comA) [Bacillus subtilis strain YB-15]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1