NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	ATS73_RS12465	Genome accession	NZ_CP092598
Coordinates	2627223..2628116 (+)	Length	297 a.a.
NCBI ID	WP_058429671.1	Uniprot ID	A0AAD0FWX3
Organism	Pseudoalteromonas sp. H100
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2622223..2633116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ATS73_RS12445 (ATS73_012370)	nadC	2622569..2623414 (+)	846	WP_058429674.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ATS73_RS12450 (ATS73_012375)	-	2623939..2624358 (+)	420	WP_058429673.1	pilin	-
ATS73_RS12455 (ATS73_012380)	-	2624677..2625762 (+)	1086	WP_235591613.1	O-antigen ligase family protein	-
ATS73_RS12460 (ATS73_012385)	-	2625851..2627079 (+)	1229	Protein_2386	type II secretion system F family protein	-
ATS73_RS12465 (ATS73_012390)	pilD	2627223..2628116 (+)	894	WP_058429671.1	A24 family peptidase	Machinery gene
ATS73_RS12470 (ATS73_012395)	coaE	2628134..2628765 (+)	632	Protein_2388	dephospho-CoA kinase	-
ATS73_RS12475 (ATS73_012400)	pilB	2628898..2630574 (+)	1677	WP_058429669.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ATS73_RS12480 (ATS73_012405)	yacG	2630642..2630872 (+)	231	WP_006794561.1	DNA gyrase inhibitor YacG	-
ATS73_RS12485 (ATS73_012410)	-	2630955..2631446 (-)	492	WP_058429668.1	Spy/CpxP family protein refolding chaperone	-
ATS73_RS12490 (ATS73_012415)	-	2631630..2632319 (+)	690	Protein_2392	response regulator	-

Sequence

Protein

Download Length: 297 a.a. Molecular weight: 32795.04 Da Isoelectric Point: 7.5495

                                >NTDB_id=659234 ATS73_RS12465 WP_058429671.1 2627223..2628116(+) (pilD) [Pseudoalteromonas sp. H100]

MQSIIEVMQSQLWFYLTTVGLVSLCVGSFLNVVIYRLPLMMQREWQSECRLLLEDELNTNQAKPKNTSEHFNLVKPNSTC

PKCKTAIKPWQNIPIISWLILKGKCASCSNPISIRYPAIEAITALLSLVVAYTFGATEQALLYIVITWALVALTFIDIDH

MLLPDQLTLPLVWLALIAAVAGITITPSDAIMGAAFGYLSLWSVFWLFKLLTGKEGMGYGDFKLLALFGALLGWQSLLTI

ILLSSVVGAIIGIALLSIQGKDKATPIPFGPYLAIAGWITLMWGNQLQSAYFNLIGY

Nucleotide

Download Length: 894 bp

                                >NTDB_id=659234 ATS73_RS12465 WP_058429671.1 2627223..2628116(+) (pilD) [Pseudoalteromonas sp. H100]

ATGCAAAGTATTATTGAAGTAATGCAAAGCCAACTGTGGTTTTATTTAACCACCGTTGGCTTAGTTAGTTTATGTGTGGG

TAGTTTTTTAAATGTAGTTATCTACCGTTTGCCGCTTATGATGCAGCGAGAGTGGCAAAGCGAGTGTAGGCTATTACTTG

AAGACGAGCTCAATACCAATCAAGCTAAACCAAAAAACACCAGCGAGCATTTTAATCTTGTAAAACCAAATTCCACCTGC

CCAAAATGCAAAACGGCCATTAAGCCTTGGCAAAATATTCCTATCATTAGCTGGTTAATACTTAAAGGTAAATGCGCAAG

TTGTAGTAACCCTATCTCTATTCGATACCCTGCTATTGAGGCCATTACCGCTCTATTAAGCTTAGTGGTTGCTTATACCT

TTGGCGCAACAGAACAAGCATTATTATATATAGTGATCACGTGGGCACTTGTGGCACTGACCTTTATTGATATAGACCAC

ATGTTACTGCCCGATCAGCTCACTTTACCGCTTGTTTGGCTCGCACTTATTGCTGCCGTTGCCGGAATTACAATTACGCC

AAGTGATGCCATTATGGGGGCAGCCTTTGGTTATTTAAGCTTATGGAGTGTTTTTTGGTTATTTAAATTGCTAACAGGTA

AAGAAGGTATGGGCTATGGCGACTTTAAACTGTTAGCGTTATTTGGTGCTCTGCTAGGCTGGCAATCATTACTCACTATA

ATACTACTTTCAAGTGTTGTTGGCGCCATTATCGGTATCGCTTTATTAAGTATTCAGGGTAAAGATAAGGCAACGCCCAT

TCCATTTGGTCCTTACTTAGCAATAGCCGGGTGGATCACGTTAATGTGGGGTAACCAATTACAAAGCGCGTATTTTAACT

TAATTGGGTACTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(145-253)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-134)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	52.901	98.653	0.522
pilD	Acinetobacter nosocomialis M2	52.901	98.653	0.522
pilD	Vibrio campbellii strain DS40M4	52.74	98.316	0.519
pilD	Vibrio cholerae strain A1552	52.74	98.316	0.519
pilD	Neisseria gonorrhoeae MS11	46.241	89.562	0.414

Detailed information NTG0659234