Detailed information    

insolico Bioinformatically predicted

Overview


Name   qstR   Type   Regulator
Locus tag   MKS89_RS13730 Genome accession   NZ_CP092587
Coordinates   3069200..3069847 (-) Length   215 a.a.
NCBI ID   WP_072958014.1    Uniprot ID   A0A1M4ZV84
Organism   Vibrio gazogenes strain PB1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 3064200..3074847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS89_RS13720 (MKS89_13740) uvrA 3065234..3068056 (-) 2823 WP_072958019.1 excinuclease ABC subunit UvrA -
  MKS89_RS13725 (MKS89_13745) galU 3068195..3069082 (-) 888 WP_072958017.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MKS89_RS13730 (MKS89_13750) qstR 3069200..3069847 (-) 648 WP_072958014.1 response regulator transcription factor Regulator
  MKS89_RS13735 (MKS89_13755) ssb 3070120..3070656 (+) 537 WP_072958012.1 single-stranded DNA-binding protein Machinery gene
  MKS89_RS13740 (MKS89_13760) metH 3070753..3074427 (-) 3675 WP_072958010.1 methionine synthase -

Sequence


Protein


Download         Length: 215 a.a.        Molecular weight: 25129.12 Da        Isoelectric Point: 9.4355

>NTDB_id=659189 MKS89_RS13730 WP_072958014.1 3069200..3069847(-) (qstR) [Vibrio gazogenes strain PB1]
MKRSNYSRVLYVLYPDNQEPSTLYHEIEVALGQILPKIQPRQFMLSHQTDRHKILLFDYQQKEVLLSRLNMDDALDLCLE
TVVINVEKRPRTEELLQLGNLKGLFYRSDPIELIIAALREIREGQIYLPRHICGQLLHYYRHLFNNKNVSAAISLTSREL
EILRCLKTGASNTQIADNLFISEFTVKSHLYQIFKKISVKNRTQATTWAKQNLVS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=659189 MKS89_RS13730 WP_072958014.1 3069200..3069847(-) (qstR) [Vibrio gazogenes strain PB1]
ATGAAAAGATCAAATTACAGCAGAGTGCTTTATGTCCTCTATCCCGATAATCAAGAACCCTCAACGCTCTATCATGAAAT
CGAGGTCGCACTAGGACAGATACTCCCCAAAATTCAACCCCGGCAATTTATGCTGTCTCATCAGACCGATCGGCACAAAA
TACTCCTGTTTGATTATCAACAAAAAGAAGTATTGCTATCCCGCTTGAATATGGATGACGCACTGGATTTGTGCCTCGAA
ACCGTAGTTATCAATGTTGAGAAGCGCCCGAGAACAGAAGAGCTTCTCCAGCTCGGTAATTTGAAAGGGCTGTTTTATCG
TAGTGATCCGATTGAATTGATCATTGCTGCGTTGCGCGAAATCCGAGAGGGGCAAATTTATTTACCGCGACATATTTGTG
GCCAGCTTCTTCATTACTATCGCCATTTATTTAACAATAAAAATGTCAGTGCGGCGATATCTTTGACGTCTAGAGAGTTG
GAAATCCTGCGTTGTCTGAAAACGGGGGCATCGAACACACAAATTGCAGATAATCTGTTTATCAGTGAATTTACGGTCAA
ATCACATTTGTATCAGATTTTTAAGAAAATCTCTGTGAAAAACCGCACTCAAGCCACAACATGGGCAAAACAGAATCTAG
TCTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1M4ZV84

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

50.23

100

0.507

  qstR Vibrio campbellii strain DS40M4

46.759

100

0.47

  qstR Vibrio parahaemolyticus RIMD 2210633

45.413

100

0.46