Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H7R08_RS05935 Genome accession   NZ_AP022095
Coordinates   1237969..1238706 (-) Length   245 a.a.
NCBI ID   WP_108430031.1    Uniprot ID   -
Organism   Escherichia coli strain WP4-S18-ESBL-08     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1232969..1243706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R08_RS05905 (WP4S18E08_11590) yfiL 1233128..1233493 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  H7R08_RS05910 (WP4S18E08_11600) aroF 1233703..1234773 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  H7R08_RS05915 (WP4S18E08_11610) tyrA 1234784..1235905 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  H7R08_RS05920 (WP4S18E08_11620) pheA 1235948..1237108 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  H7R08_RS05925 pheL 1237206..1237253 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  H7R08_RS05930 (WP4S18E08_11630) raiA 1237357..1237698 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  H7R08_RS05935 (WP4S18E08_11640) comL 1237969..1238706 (-) 738 WP_108430031.1 outer membrane protein assembly factor BamD Machinery gene
  H7R08_RS05940 (WP4S18E08_11650) rluD 1238841..1239821 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7R08_RS05945 (WP4S18E08_11660) yfiH 1239818..1240549 (+) 732 WP_000040127.1 purine nucleoside phosphorylase YfiH -
  H7R08_RS05950 (WP4S18E08_11670) clpC 1240679..1243252 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27819.36 Da        Isoelectric Point: 6.4874

>NTDB_id=65872 H7R08_RS05935 WP_108430031.1 1237969..1238706(-) (comL) [Escherichia coli strain WP4-S18-ESBL-08]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALSLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=65872 H7R08_RS05935 WP_108430031.1 1237969..1238706(-) (comL) [Escherichia coli strain WP4-S18-ESBL-08]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGTCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment