Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NY40_RS04780 Genome accession   NZ_AP014523
Coordinates   956500..957300 (+) Length   266 a.a.
NCBI ID   WP_041050847.1    Uniprot ID   -
Organism   Helicobacter pylori NY40     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 951500..962300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY40_RS04745 (NY40_0959) pseH 951984..952526 (+) 543 WP_041050835.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  NY40_RS04750 (NY40_0960) - 952459..953397 (-) 939 WP_041050837.1 tetraacyldisaccharide 4'-kinase -
  NY40_RS04755 (NY40_0961) - 953404..954186 (-) 783 WP_041050839.1 NAD+ synthase -
  NY40_RS04765 (NY40_0963) ilvC 954436..955428 (+) 993 WP_041050841.1 ketol-acid reductoisomerase -
  NY40_RS04770 (NY40_0964) minD 955452..956258 (+) 807 WP_041050843.1 septum site-determining protein MinD -
  NY40_RS04775 (NY40_0965) minE 956255..956488 (+) 234 WP_041050845.1 cell division topological specificity factor MinE -
  NY40_RS04780 (NY40_0966) dprA 956500..957300 (+) 801 WP_041050847.1 DNA-processing protein DprA Machinery gene
  NY40_RS04785 (NY40_0967) dprB 957297..957707 (+) 411 WP_041050849.1 Holliday junction resolvase RuvX Machinery gene
  NY40_RS09570 (NY40_0969) - 957987..958840 (+) 854 Protein_929 tetratricopeptide repeat protein -
  NY40_RS04795 (NY40_0970) - 958968..959306 (+) 339 WP_021176524.1 hypothetical protein -
  NY40_RS04800 (NY40_0971) - 959290..959850 (+) 561 WP_021176525.1 hypothetical protein -
  NY40_RS04805 (NY40_0972) - 959992..960873 (-) 882 WP_041050851.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29865.79 Da        Isoelectric Point: 8.7885

>NTDB_id=65791 NY40_RS04780 WP_041050847.1 956500..957300(+) (dprA) [Helicobacter pylori NY40]
MKSHFQYSALENIPKAFDILKDSPKKLYCVGDTKLLDAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDVVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYFAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=65791 NY40_RS04780 WP_041050847.1 956500..957300(+) (dprA) [Helicobacter pylori NY40]
ATGAAAAGCCACTTCCAATACAGCGCGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACTCTCCTAAAAAGCT
CTATTGTGTGGGCGATACCAAGCTTTTGGACGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACCATCACTCTAGCTAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTGATCTATCCTACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGTAGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGTAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTATTTGTTTTACCCCAACGCCTGAATGAAAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTTTGCGAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.992

100

0.97
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.611

81.203

0.395

Multiple sequence alignment