Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   NY40_RS04785 Genome accession   NZ_AP014523
Coordinates   957297..957707 (+) Length   136 a.a.
NCBI ID   WP_041050849.1    Uniprot ID   A0A060Q0S7
Organism   Helicobacter pylori NY40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 952297..962707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY40_RS04750 (NY40_0960) - 952459..953397 (-) 939 WP_041050837.1 tetraacyldisaccharide 4'-kinase -
  NY40_RS04755 (NY40_0961) - 953404..954186 (-) 783 WP_041050839.1 NAD+ synthase -
  NY40_RS04765 (NY40_0963) ilvC 954436..955428 (+) 993 WP_041050841.1 ketol-acid reductoisomerase -
  NY40_RS04770 (NY40_0964) minD 955452..956258 (+) 807 WP_041050843.1 septum site-determining protein MinD -
  NY40_RS04775 (NY40_0965) minE 956255..956488 (+) 234 WP_041050845.1 cell division topological specificity factor MinE -
  NY40_RS04780 (NY40_0966) dprA 956500..957300 (+) 801 WP_041050847.1 DNA-processing protein DprA Machinery gene
  NY40_RS04785 (NY40_0967) dprB 957297..957707 (+) 411 WP_041050849.1 Holliday junction resolvase RuvX Machinery gene
  NY40_RS09570 (NY40_0969) - 957987..958840 (+) 854 Protein_929 tetratricopeptide repeat protein -
  NY40_RS04795 (NY40_0970) - 958968..959306 (+) 339 WP_021176524.1 hypothetical protein -
  NY40_RS04800 (NY40_0971) - 959290..959850 (+) 561 WP_021176525.1 hypothetical protein -
  NY40_RS04805 (NY40_0972) - 959992..960873 (-) 882 WP_041050851.1 RluA family pseudouridine synthase -
  NY40_RS04810 (NY40_0973) recJ 960873..962423 (-) 1551 WP_041050853.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15460.03 Da        Isoelectric Point: 10.2199

>NTDB_id=65792 NY40_RS04785 WP_041050849.1 957297..957707(+) (dprB) [Helicobacter pylori NY40]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRNLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVGFKGK
IVFINEDNSSIEAYDNLEHLGRKNKRLATKDGRLDSLSACRILERYCQQVLKKRWG

Nucleotide


Download         Length: 411 bp        

>NTDB_id=65792 NY40_RS04785 WP_041050849.1 957297..957707(+) (dprB) [Helicobacter pylori NY40]
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGAATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGAATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGGTTTTAAGGGCAAA
ATCGTTTTTATTAATGAAGATAATTCCAGCATAGAAGCTTATGATAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTGGGGATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060Q0S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

91.667

97.059

0.89

Multiple sequence alignment