Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   MJX77_RS18645 Genome accession   NZ_CP092454
Coordinates   3935668..3936375 (+) Length   235 a.a.
NCBI ID   WP_004793675.1    Uniprot ID   A0AAJ1PDR6
Organism   Acinetobacter sp. AHP123     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3930668..3941375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJX77_RS18620 - 3932317..3933135 (-) 819 WP_252060132.1 Dyp-type peroxidase domain-containing protein -
  MJX77_RS18625 - 3933479..3934288 (+) 810 WP_252060134.1 M23 family metallopeptidase -
  MJX77_RS18630 - 3934285..3934710 (-) 426 WP_252060135.1 GNAT family N-acetyltransferase -
  MJX77_RS18635 - 3934806..3935228 (-) 423 WP_252060137.1 OsmC family protein -
  MJX77_RS18640 - 3935364..3935426 (-) 63 Protein_3617 hypothetical protein -
  MJX77_RS18645 crp 3935668..3936375 (+) 708 WP_004793675.1 cAMP-activated global transcriptional regulator CRP Regulator
  MJX77_RS18650 - 3936535..3937584 (+) 1050 WP_252060139.1 NADP(H)-dependent aldo-keto reductase -
  MJX77_RS18655 - 3937638..3938420 (-) 783 WP_005299044.1 M48 family metallopeptidase -
  MJX77_RS18660 - 3938536..3938853 (-) 318 WP_005299047.1 hypothetical protein -
  MJX77_RS18665 - 3938974..3940293 (-) 1320 WP_151767711.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26521.16 Da        Isoelectric Point: 4.6625

>NTDB_id=657740 MJX77_RS18645 WP_004793675.1 3935668..3936375(+) (crp) [Acinetobacter sp. AHP123]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDVSLEEAPVSDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=657740 MJX77_RS18645 WP_004793675.1 3935668..3936375(+) (crp) [Acinetobacter sp. AHP123]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTATTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCGAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGACGAACGTGAAATTGTTGTTGCGTATTTGAATCCGGGCGACTTT
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTCCGTACTCGTGATGTCTGTGAAATTGCAGA
AATTTCTTATGACAACTTCCACGAACTTAGCAAACAATATCCGGACTTAAGTTATGCTGTTTTTGCACAACTTGTTCGCC
GTCTAAAAAATACAACTCGTAAAATGACAGATCTTGCGTTTATTGATGTGTCTGGACGTATTGCACGTTGTTTAATTGAC
TTATCTTCACAGCCAGAAGCAATGATTTTGCCAAACGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
GGGATGTTCACGTGAGATGGTTGGCCGTGTACTCAAGACCTTAGAAGATCAAGGCATGATCCAGACAGATGGTAAAGCTA
TTCTTATTTTTGATGTTTCATTAGAAGAAGCACCTGTTTCTGATGAAGATTATGATGATGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

98.298

100

0.983
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4