Detailed information NTG0065765

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PPC_RS26345
• Genome accession: NZ_AP014522
• Coordinates: 5857206..5858540 (+)
• Length: 444 a.a.
• NCBI ID: WP_041119936.1
• Uniprot ID: -
• Organism: Pseudomonas protegens Cab57
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5852206..5863540

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPC_RS26325 (PPC_5279)	pgeF	5853565..5854290 (-)	726	WP_019092897.1	peptidoglycan editing factor PgeF	-
PPC_RS26330 (PPC_5280)	rluD	5854287..5855249 (-)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PPC_RS26335 (PPC_5281)	-	5855400..5856422 (+)	1023	WP_041119934.1	outer membrane protein assembly factor BamD	-
PPC_RS26340 (PPC_5282)	-	5856547..5856780 (+)	234	WP_041119935.1	PP0621 family protein	-
PPC_RS26345 (PPC_5283)	pilR	5857206..5858540 (+)	1335	WP_041119936.1	sigma-54-dependent transcriptional regulator	Regulator
PPC_RS26350 (PPC_5284)	thiO	5858537..5859637 (-)	1101	WP_041119937.1	glycine oxidase ThiO	-
PPC_RS26355 (PPC_5285)	-	5859691..5860092 (-)	402	WP_015637084.1	type IV pilin protein	-
PPC_RS26360 (PPC_5286)	-	5860108..5863170 (-)	3063	WP_041119938.1	pilus assembly protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49247.48 Da
• Isoelectric Point: 8.6786

>NTDB_id=65765 PPC_RS26345 WP_041119936.1 5857206..5858540(+) (pilR) [Pseudomonas protegens Cab57]
MNPRQSVLVVDDATETRALLEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKQATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRAQYPFVPVNCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKSVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVKLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=65765 PPC_RS26345 WP_041119936.1 5857206..5858540(+) (pilR) [Pseudomonas protegens Cab57]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTCTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGTTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCCGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCCCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAACAGGCTACGGACTGCGCAACGGATGACCCAGCCCGGC
AGTTGCTGGGGGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGCGAATCCGGCAGTGGCAAGGAACGGGTCGCCCGTCTGCTCCACCAGCTTGGCCCCAGGGCCCAATACCCGTT
CGTCCCGGTCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTGGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAATCCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGCTGCGAGTCCCGGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGCCAGCCTGCCGTCAAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGATTTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.431	99.775	0.633
pilR	Acinetobacter baumannii strain A118	45.316	100	0.468
luxO	Vibrio cholerae strain A1552	37.558	97.748	0.367