Detailed information NTG0065755

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PPC_RS09125
• Genome accession: NZ_AP014522
• Coordinates: 2000620..2002851 (+)
• Length: 743 a.a.
• NCBI ID: WP_041116775.1
• Uniprot ID: -
• Organism: Pseudomonas protegens Cab57
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1995620..2007851

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPC_RS09100 (PPC_1818)	-	1996745..1997404 (+)	660	WP_011060094.1	transglutaminase-like domain-containing protein	-
PPC_RS09105 (PPC_1819)	-	1997447..1998070 (+)	624	WP_041116771.1	glutathione S-transferase	-
PPC_RS09110 (PPC_1820)	-	1998203..1999135 (+)	933	WP_041116773.1	ABC transporter ATP-binding protein	-
PPC_RS09115 (PPC_1821)	-	1999132..1999911 (+)	780	WP_011060097.1	ABC transporter permease	-
PPC_RS09120 (PPC_1822)	-	1999965..2000480 (-)	516	WP_015634695.1	DUF2062 domain-containing protein	-
PPC_RS09125 (PPC_1823)	comA	2000620..2002851 (+)	2232	WP_041116775.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PPC_RS09130 (PPC_1824)	exbB	2002954..2003589 (+)	636	WP_011060100.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PPC_RS09135 (PPC_1825)	-	2003586..2004014 (+)	429	WP_011060101.1	ExbD/TolR family protein	-
PPC_RS09140 (PPC_1826)	lpxK	2004014..2005024 (+)	1011	WP_015634697.1	tetraacyldisaccharide 4'-kinase	-
PPC_RS09145 (PPC_1827)	-	2005049..2005234 (+)	186	WP_011060103.1	Trm112 family protein	-
PPC_RS09150 (PPC_1828)	kdsB	2005231..2005995 (+)	765	WP_011060104.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PPC_RS09155 (PPC_1829)	-	2005995..2006459 (+)	465	WP_041116777.1	low molecular weight protein-tyrosine-phosphatase	-
PPC_RS09160 (PPC_1830)	murB	2006456..2007475 (+)	1020	WP_011060106.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81317.68 Da
• Isoelectric Point: 10.8644

>NTDB_id=65755 PPC_RS09125 WP_041116775.1 2000620..2002851(+) (comA) [Pseudomonas protegens Cab57]
MRSAMLALAAGLLALGFMPALPPGWLLLCMAILALMLLPFRTHPVAFFLFGFTWACVSAQSALDDRLAPRLEAQTRWLEG
RVSGLPEQAGGVVRFELEDAQARREQLPRRMRLAWREGPALKSGERWRLAVKLRQPMGLLNPQGFDYQAWLLARRIGATG
TVKAGQLLAPAPQAWRQGLRQRLLEVEAQGRGAGLAALVMGDGSGLTRQDWQLLQDTGTVHLMVISGQHISLLAGVIYFA
VAGLSRHGLWPERLPWLPWACALAWLGALGYGLLAGFDVPVQRACVMVALVLLWRMRFRHLRAGWPLLLALNAVLLAEPL
ASLQAGFWLSFAAVAILILIFAGRLGAWSWWQGWTRAQWLIAVGLLPPLLALGLPISLSGPLANLLAVPWISFLVLPPAL
LGSLLLPVPYVGEGLLWLAGGLLDGLFRLLGLIAGGWPAWVPPQIPLWLWGMNALGCLLLLLPRGVPMRVLGWPLLLLAV
WPPLARVPEGEVEVWQLDVGQGLSFILRTRDHALLYDAGARVAEFDLGERVVVPTLHRLGIRRLDLMLLSHADNDHAGGA
QAVQRAMPVGEVRGGQPDALPAGLQARPCDSGLSWVWNGVRFRQWQWAAATDGNQASCVLQVEAAGERLLLTGDIDARAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLQRLAPDAVLISRGRGNAFGHPNPQVLARYRRLDMAIYDSAEQGALRLQL
GVFGAAHGLREQRRFWREPPAMP

Nucleotide

• Length: 2232 bp

>NTDB_id=65755 PPC_RS09125 WP_041116775.1 2000620..2002851(+) (comA) [Pseudomonas protegens Cab57]
ATGCGTAGCGCAATGCTGGCGCTGGCTGCAGGGCTGCTGGCGCTGGGTTTCATGCCGGCCTTGCCCCCAGGCTGGCTGCT
GCTGTGTATGGCGATACTGGCCTTGATGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGTTTCACCT
GGGCCTGTGTGTCCGCGCAGTCGGCCCTGGATGATCGCCTGGCGCCGCGCCTGGAGGCACAGACCCGCTGGCTGGAGGGG
CGGGTGAGCGGCCTGCCGGAGCAGGCGGGCGGCGTGGTGCGTTTCGAGCTGGAAGATGCCCAGGCCCGCCGTGAGCAGCT
GCCCCGGCGCATGCGGCTGGCCTGGCGTGAGGGCCCGGCGCTCAAGAGTGGCGAGCGCTGGCGGCTGGCGGTCAAGCTTC
GCCAGCCGATGGGTTTGTTGAATCCCCAGGGCTTCGATTACCAGGCCTGGCTGCTGGCGCGCCGTATCGGCGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTGGCACCGGCCCCGCAGGCCTGGCGGCAAGGCTTGCGCCAGCGCTTGCTAGAGGTCGA
GGCTCAGGGGCGCGGTGCGGGGTTGGCGGCGCTGGTGATGGGCGACGGTTCCGGCCTGACGCGGCAAGACTGGCAGCTGT
TGCAGGACACCGGCACCGTCCACTTGATGGTGATTTCCGGGCAGCACATCAGCCTGCTGGCTGGGGTGATCTATTTCGCG
GTGGCCGGGCTGTCCCGCCATGGTCTCTGGCCCGAGCGCTTGCCGTGGTTGCCCTGGGCCTGTGCCCTGGCCTGGCTCGG
CGCCCTGGGCTACGGCCTGCTGGCGGGGTTCGATGTGCCAGTGCAGCGCGCCTGTGTGATGGTCGCCCTGGTACTGCTCT
GGCGCATGCGCTTTCGCCATCTGCGGGCCGGCTGGCCCCTGCTGCTGGCGTTGAATGCGGTGTTGCTGGCCGAGCCGCTG
GCCAGCTTGCAGGCGGGGTTCTGGCTGTCCTTTGCCGCAGTGGCAATCCTGATCTTGATCTTTGCCGGGCGCCTGGGGGC
GTGGAGCTGGTGGCAGGGCTGGACCCGGGCCCAATGGTTGATCGCCGTTGGCCTGCTGCCGCCGTTGCTGGCTCTGGGGC
TGCCTATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGATCAGCTTTCTGGTGTTGCCGCCGGCTTTG
CTCGGCAGCCTGCTGCTGCCGGTGCCTTATGTGGGTGAGGGCCTGTTGTGGCTGGCCGGTGGATTGCTGGACGGGTTGTT
CCGCTTGCTCGGATTGATTGCCGGTGGGTGGCCGGCCTGGGTGCCGCCGCAGATCCCTCTGTGGCTATGGGGCATGAATG
CTCTGGGCTGCCTGTTGCTGCTGTTGCCCAGGGGCGTGCCCATGCGGGTTCTGGGTTGGCCGCTGTTGCTCCTGGCGGTC
TGGCCACCCCTGGCGCGAGTGCCCGAAGGCGAGGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGTCATTCATCCT
GCGTACCCGTGATCACGCCCTGCTGTATGACGCTGGCGCGCGGGTCGCCGAGTTCGACCTGGGAGAGCGAGTGGTAGTGC
CGACCCTGCACAGGCTCGGCATCCGGCGGCTGGACCTGATGCTGCTCAGCCATGCCGACAACGACCATGCCGGTGGCGCC
CAGGCGGTGCAGCGCGCAATGCCCGTGGGCGAGGTCCGCGGTGGCCAGCCCGACGCCTTGCCCGCGGGCCTGCAGGCAAG
GCCTTGCGACAGTGGGCTGAGCTGGGTGTGGAATGGCGTGCGCTTTCGCCAGTGGCAATGGGCGGCGGCGACCGACGGCA
ATCAGGCCTCGTGCGTGCTCCAGGTCGAGGCTGCCGGCGAGCGCCTGCTGCTCACCGGGGACATCGACGCCCGTGCCGAA
CGAGCCTTGCTCGACAGCCCGCTGGCGGTGCGGACCCACTGGCTGCAGGCACCCCATCACGGCAGCCGTACCTCTTCATC
CATGGCCTTGCTGCAGCGGCTGGCCCCCGACGCGGTGCTGATTTCCCGTGGTCGGGGCAATGCCTTCGGCCACCCCAATC
CTCAAGTGCTGGCACGCTATCGGCGCCTGGACATGGCAATTTATGACAGCGCCGAACAGGGTGCCCTGAGGCTGCAACTG
GGGGTCTTCGGGGCGGCACATGGCCTTCGCGAGCAGCGGCGATTCTGGCGTGAGCCGCCCGCAATGCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.156	96.501	0.619
comA	Ralstonia pseudosolanacearum GMI1000	32.773	100	0.367